Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 52104 | 1.09 | 0.002192 |
Target: 5'- gCACCAACAUUGCGCACAUCUCCCGCAg -3' miRNA: 3'- -GUGGUUGUAACGCGUGUAGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 54273 | 0.66 | 0.879894 |
Target: 5'- cCGCCGAagagGCGCugGUC-CUCGCc -3' miRNA: 3'- -GUGGUUguaaCGCGugUAGaGGGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 31993 | 0.66 | 0.872127 |
Target: 5'- uCGCCAGCAUcgGCucGCugAUCggCgCCGCGg -3' miRNA: 3'- -GUGGUUGUAa-CG--CGugUAGa-G-GGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 49357 | 0.66 | 0.855849 |
Target: 5'- gCGCUGACcacuggGCGCACAcCUUCUGCGu -3' miRNA: 3'- -GUGGUUGuaa---CGCGUGUaGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 39832 | 0.66 | 0.855849 |
Target: 5'- gACC-GCAccGCGCGCAcCgcgCCCGCGc -3' miRNA: 3'- gUGGuUGUaaCGCGUGUaGa--GGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 74170 | 0.67 | 0.820537 |
Target: 5'- gGCCAACAgguggccaGCGCaACGUUUCuguCCGCAg -3' miRNA: 3'- gUGGUUGUaa------CGCG-UGUAGAG---GGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 36138 | 0.67 | 0.811187 |
Target: 5'- cCGCCAcuucuCGUcuucgguuucgGCGCACAgCUCCCGUAu -3' miRNA: 3'- -GUGGUu----GUAa----------CGCGUGUaGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 22491 | 0.67 | 0.811187 |
Target: 5'- cCACCAuCAUcgGCGCcucggACGUaucgggaaCUCCCGCAg -3' miRNA: 3'- -GUGGUuGUAa-CGCG-----UGUA--------GAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 17297 | 0.68 | 0.782045 |
Target: 5'- aCGCCcuGCug-GCGCGCGUg-CCCGCGg -3' miRNA: 3'- -GUGGu-UGuaaCGCGUGUAgaGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 6072 | 0.68 | 0.782045 |
Target: 5'- -uCCAACAUcucggcgcagaUGCGCGCGUuCUaCCGCGa -3' miRNA: 3'- guGGUUGUA-----------ACGCGUGUA-GAgGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 46761 | 0.74 | 0.440854 |
Target: 5'- gACCGGCGcUGCGCGCGcacggcgucacggUCaUCCCGCGc -3' miRNA: 3'- gUGGUUGUaACGCGUGU-------------AG-AGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 10846 | 0.71 | 0.59934 |
Target: 5'- cCGCCGcgAUUGCG-ACcUCUCCCGCGg -3' miRNA: 3'- -GUGGUugUAACGCgUGuAGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 58565 | 0.7 | 0.642356 |
Target: 5'- gGCCAGCGUcaagcucgaUGCggagaccGCGCGUCUCCUGUc -3' miRNA: 3'- gUGGUUGUA---------ACG-------CGUGUAGAGGGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 13324 | 0.69 | 0.719845 |
Target: 5'- gGCCGACAacgGCGaagucuuCGUCaUCCCGCAu -3' miRNA: 3'- gUGGUUGUaa-CGCgu-----GUAG-AGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 32692 | 0.68 | 0.745242 |
Target: 5'- cCGCCGACGUcGCGCggcugguggaugaggACcUCUUCCGCu -3' miRNA: 3'- -GUGGUUGUAaCGCG---------------UGuAGAGGGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 26603 | 0.68 | 0.751494 |
Target: 5'- gCACCAACGgcguugGCGUccagacguucucGCAgauUUUCCCGCAg -3' miRNA: 3'- -GUGGUUGUaa----CGCG------------UGU---AGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 27820 | 0.68 | 0.772003 |
Target: 5'- gCGCCAACGgugGCGCAucCGUCuucucaUCCgGCAg -3' miRNA: 3'- -GUGGUUGUaa-CGCGU--GUAG------AGGgCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 36214 | 0.65 | 0.885178 |
Target: 5'- gGCgCAAgAUUGCccGCGCAUUcgaugggagcacguUCCCGCAc -3' miRNA: 3'- gUG-GUUgUAACG--CGUGUAG--------------AGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 51020 | 0.7 | 0.63242 |
Target: 5'- gACCGACGaUGCaGCAgGgcUCUCCCGUg -3' miRNA: 3'- gUGGUUGUaACG-CGUgU--AGAGGGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 17386 | 0.7 | 0.647872 |
Target: 5'- gCGCCAGCAggGCGU-CGUCUccgggauacccgccgCCCGCGu -3' miRNA: 3'- -GUGGUUGUaaCGCGuGUAGA---------------GGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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