Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 22144 | 0.68 | 0.755638 |
Target: 5'- uCGCCGAUgaacacuuggacuugGUUGCGCGCG-CUCgCGCu -3' miRNA: 3'- -GUGGUUG---------------UAACGCGUGUaGAGgGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 5974 | 0.68 | 0.751494 |
Target: 5'- aGCCAGCG-UGCGCGCGgucgaacugUUCgCGCAg -3' miRNA: 3'- gUGGUUGUaACGCGUGUa--------GAGgGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 22748 | 0.68 | 0.741051 |
Target: 5'- uGCgGACGUaggcgaucugcuUGCGCGCGgcgCUgCCCGCGg -3' miRNA: 3'- gUGgUUGUA------------ACGCGUGUa--GA-GGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 57503 | 0.69 | 0.698288 |
Target: 5'- aCGCCAGCAUcgcggaGCGCGCugagaugUUCCUGCGc -3' miRNA: 3'- -GUGGUUGUAa-----CGCGUGua-----GAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 29934 | 0.69 | 0.684131 |
Target: 5'- gCGCCAACAggggcaaGCGCGCcgCguuggaugccgagcUCCCGCGc -3' miRNA: 3'- -GUGGUUGUaa-----CGCGUGuaG--------------AGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 21517 | 0.7 | 0.676472 |
Target: 5'- gCGCCAGCAccUUGCccaGgACGcUCUCCUGCAa -3' miRNA: 3'- -GUGGUUGU--AACG---CgUGU-AGAGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 17386 | 0.7 | 0.647872 |
Target: 5'- gCGCCAGCAggGCGU-CGUCUccgggauacccgccgCCCGCGu -3' miRNA: 3'- -GUGGUUGUaaCGCGuGUAGA---------------GGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 51020 | 0.7 | 0.63242 |
Target: 5'- gACCGACGaUGCaGCAgGgcUCUCCCGUg -3' miRNA: 3'- gUGGUUGUaACG-CGUgU--AGAGGGCGu -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 38893 | 0.72 | 0.555664 |
Target: 5'- gGCgGAC-UUGCGCGCGg--CCCGCAg -3' miRNA: 3'- gUGgUUGuAACGCGUGUagaGGGCGU- -5' |
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18490 | 5' | -53.2 | NC_004681.1 | + | 36214 | 0.65 | 0.885178 |
Target: 5'- gGCgCAAgAUUGCccGCGCAUUcgaugggagcacguUCCCGCAc -3' miRNA: 3'- gUG-GUUgUAACG--CGUGUAG--------------AGGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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