miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18490 5' -53.2 NC_004681.1 + 32692 0.68 0.745242
Target:  5'- cCGCCGACGUcGCGCggcugguggaugaggACcUCUUCCGCu -3'
miRNA:   3'- -GUGGUUGUAaCGCG---------------UGuAGAGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 26603 0.68 0.751494
Target:  5'- gCACCAACGgcguugGCGUccagacguucucGCAgauUUUCCCGCAg -3'
miRNA:   3'- -GUGGUUGUaa----CGCG------------UGU---AGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 27820 0.68 0.772003
Target:  5'- gCGCCAACGgugGCGCAucCGUCuucucaUCCgGCAg -3'
miRNA:   3'- -GUGGUUGUaa-CGCGU--GUAG------AGGgCGU- -5'
18490 5' -53.2 NC_004681.1 + 6072 0.68 0.782045
Target:  5'- -uCCAACAUcucggcgcagaUGCGCGCGUuCUaCCGCGa -3'
miRNA:   3'- guGGUUGUA-----------ACGCGUGUA-GAgGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 17297 0.68 0.782045
Target:  5'- aCGCCcuGCug-GCGCGCGUg-CCCGCGg -3'
miRNA:   3'- -GUGGu-UGuaaCGCGUGUAgaGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 22491 0.67 0.811187
Target:  5'- cCACCAuCAUcgGCGCcucggACGUaucgggaaCUCCCGCAg -3'
miRNA:   3'- -GUGGUuGUAa-CGCG-----UGUA--------GAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 36138 0.67 0.811187
Target:  5'- cCGCCAcuucuCGUcuucgguuucgGCGCACAgCUCCCGUAu -3'
miRNA:   3'- -GUGGUu----GUAa----------CGCGUGUaGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 74170 0.67 0.820537
Target:  5'- gGCCAACAgguggccaGCGCaACGUUUCuguCCGCAg -3'
miRNA:   3'- gUGGUUGUaa------CGCG-UGUAGAG---GGCGU- -5'
18490 5' -53.2 NC_004681.1 + 39832 0.66 0.855849
Target:  5'- gACC-GCAccGCGCGCAcCgcgCCCGCGc -3'
miRNA:   3'- gUGGuUGUaaCGCGUGUaGa--GGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 52104 1.09 0.002192
Target:  5'- gCACCAACAUUGCGCACAUCUCCCGCAg -3'
miRNA:   3'- -GUGGUUGUAACGCGUGUAGAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.