miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18491 5' -53.8 NC_004681.1 + 44428 0.66 0.85016
Target:  5'- --aCGCGcgCGcccaGCGUG-GCUGGCugGg -3'
miRNA:   3'- uugGCGUuaGC----UGUACuCGACCGugC- -5'
18491 5' -53.8 NC_004681.1 + 24823 0.66 0.849306
Target:  5'- uGCCGguGUCGACugcGAuGCcgacccaUGGCACGu -3'
miRNA:   3'- uUGGCguUAGCUGua-CU-CG-------ACCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 37201 0.66 0.841523
Target:  5'- --aCGCAuUCGACA-GGGCU-GCGCGu -3'
miRNA:   3'- uugGCGUuAGCUGUaCUCGAcCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 21342 0.66 0.814324
Target:  5'- cGACCGCAG-CGGCGUcacGGGUccuaccGGCACGu -3'
miRNA:   3'- -UUGGCGUUaGCUGUA---CUCGa-----CCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 50386 0.67 0.795216
Target:  5'- cGGCCGCGGg-GACGUGGcccuucuuGCggugGGCGCGg -3'
miRNA:   3'- -UUGGCGUUagCUGUACU--------CGa---CCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 42295 0.67 0.775424
Target:  5'- -uCCGCuccaguUCGGCGUGAcggagGUUGGCACc -3'
miRNA:   3'- uuGGCGuu----AGCUGUACU-----CGACCGUGc -5'
18491 5' -53.8 NC_004681.1 + 60439 0.67 0.7653
Target:  5'- uGCCGC-AUCGAgUAUGAGCagGGCGg- -3'
miRNA:   3'- uUGGCGuUAGCU-GUACUCGa-CCGUgc -5'
18491 5' -53.8 NC_004681.1 + 19360 0.68 0.755038
Target:  5'- uGACCGCGGUCcAgGUGAagacCUGGCGCu -3'
miRNA:   3'- -UUGGCGUUAGcUgUACUc---GACCGUGc -5'
18491 5' -53.8 NC_004681.1 + 73369 0.68 0.723545
Target:  5'- -uCCGUA---GGCAUGAGCgcaUGGCGCGa -3'
miRNA:   3'- uuGGCGUuagCUGUACUCG---ACCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 62185 0.69 0.695575
Target:  5'- gGGCgGCAagAUCGGCgagauugaggacaugGUGGGCUGGUACc -3'
miRNA:   3'- -UUGgCGU--UAGCUG---------------UACUCGACCGUGc -5'
18491 5' -53.8 NC_004681.1 + 17204 0.69 0.680328
Target:  5'- uGCCGUAcuUCGGCAUGAacaugaacGCUGGCGg- -3'
miRNA:   3'- uUGGCGUu-AGCUGUACU--------CGACCGUgc -5'
18491 5' -53.8 NC_004681.1 + 14493 0.69 0.658399
Target:  5'- gGGCgCGCuggUGGCcgGuGCUGGCGCGa -3'
miRNA:   3'- -UUG-GCGuuaGCUGuaCuCGACCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 25054 0.69 0.647393
Target:  5'- uGACCGCAGagggCGGCGcGGGC-GGCACc -3'
miRNA:   3'- -UUGGCGUUa---GCUGUaCUCGaCCGUGc -5'
18491 5' -53.8 NC_004681.1 + 48985 0.7 0.636373
Target:  5'- -cCCGCGua-GACGUGAGaCaGGCGCGa -3'
miRNA:   3'- uuGGCGUuagCUGUACUC-GaCCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 6980 0.7 0.625348
Target:  5'- uGCCGUggUCGACGUcGAGCgGGacuCGg -3'
miRNA:   3'- uUGGCGuuAGCUGUA-CUCGaCCgu-GC- -5'
18491 5' -53.8 NC_004681.1 + 22273 0.7 0.602228
Target:  5'- -uCCGCGuggCGGCGUGGGCgcccugcccgucaUGGCGCa -3'
miRNA:   3'- uuGGCGUua-GCUGUACUCG-------------ACCGUGc -5'
18491 5' -53.8 NC_004681.1 + 24299 0.7 0.592349
Target:  5'- aGGCCGCGGUUGAUcgGcuuGUUGGUGCGc -3'
miRNA:   3'- -UUGGCGUUAGCUGuaCu--CGACCGUGC- -5'
18491 5' -53.8 NC_004681.1 + 34346 0.71 0.570503
Target:  5'- cGCCGCGG-CGGCGUGAggGUUGuGCGCGc -3'
miRNA:   3'- uUGGCGUUaGCUGUACU--CGAC-CGUGC- -5'
18491 5' -53.8 NC_004681.1 + 10373 0.71 0.527476
Target:  5'- cGCCGCu-UCGGCAgUGucGCUGGCACc -3'
miRNA:   3'- uUGGCGuuAGCUGU-ACu-CGACCGUGc -5'
18491 5' -53.8 NC_004681.1 + 14573 0.72 0.475518
Target:  5'- cGGCCGCAGUCGccuucggcaccgGCA--AGCUGGCugGc -3'
miRNA:   3'- -UUGGCGUUAGC------------UGUacUCGACCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.