miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18492 3' -50.1 NC_004681.1 + 48237 0.66 0.977593
Target:  5'- ----cCGAGGCUCGCcaGUC-CGAuACGGg -3'
miRNA:   3'- cuuaaGCUCUGGGCG--UAGuGCU-UGCC- -5'
18492 3' -50.1 NC_004681.1 + 33366 0.66 0.977593
Target:  5'- ----cUGAGACcggCCGCGUCGCGcGCGc -3'
miRNA:   3'- cuuaaGCUCUG---GGCGUAGUGCuUGCc -5'
18492 3' -50.1 NC_004681.1 + 14542 0.66 0.972057
Target:  5'- -cGUUCGcc-UCCGCcUCGCGGGCGGc -3'
miRNA:   3'- cuUAAGCucuGGGCGuAGUGCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 60198 0.67 0.970218
Target:  5'- ---aUCGGcACCCGCcgCGCGGggaucacgccuagugGCGGa -3'
miRNA:   3'- cuuaAGCUcUGGGCGuaGUGCU---------------UGCC- -5'
18492 3' -50.1 NC_004681.1 + 34540 0.67 0.965596
Target:  5'- ---gUCGGcGGCaCCGuCAUCugGGAUGGc -3'
miRNA:   3'- cuuaAGCU-CUG-GGC-GUAGugCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 62340 0.67 0.962
Target:  5'- ----aCGAGGCCCuGCGUUACGGcuucguggauCGGa -3'
miRNA:   3'- cuuaaGCUCUGGG-CGUAGUGCUu---------GCC- -5'
18492 3' -50.1 NC_004681.1 + 3884 0.67 0.958151
Target:  5'- aGggUUCGAG-CCCaguGCAgacuUCGCGucAGCGGc -3'
miRNA:   3'- -CuuAAGCUCuGGG---CGU----AGUGC--UUGCC- -5'
18492 3' -50.1 NC_004681.1 + 53081 0.67 0.954044
Target:  5'- ---aUCGGGACCCGCgcuacaucgacGUCACugccugggauGAGCGa -3'
miRNA:   3'- cuuaAGCUCUGGGCG-----------UAGUG----------CUUGCc -5'
18492 3' -50.1 NC_004681.1 + 3735 0.68 0.945032
Target:  5'- cGAAggCGAGggcgGCCUGCuucuuGUCGCGGGCGa -3'
miRNA:   3'- -CUUaaGCUC----UGGGCG-----UAGUGCUUGCc -5'
18492 3' -50.1 NC_004681.1 + 73355 0.68 0.945032
Target:  5'- ---aUCGGuGuCCUGCGUCGCGGGCa- -3'
miRNA:   3'- cuuaAGCU-CuGGGCGUAGUGCUUGcc -5'
18492 3' -50.1 NC_004681.1 + 48711 0.68 0.94012
Target:  5'- --cUUCGAGucGCCCGCgGUCaACGAGCu- -3'
miRNA:   3'- cuuAAGCUC--UGGGCG-UAG-UGCUUGcc -5'
18492 3' -50.1 NC_004681.1 + 44747 0.68 0.934934
Target:  5'- cGAcgUCGAgGACUC-CcUCGCGGGCGGc -3'
miRNA:   3'- -CUuaAGCU-CUGGGcGuAGUGCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 35360 0.68 0.934934
Target:  5'- ----aCGAGGCCCGCuggguGUCGgGAugGa -3'
miRNA:   3'- cuuaaGCUCUGGGCG-----UAGUgCUugCc -5'
18492 3' -50.1 NC_004681.1 + 40240 0.68 0.929472
Target:  5'- cGGcgUCGcGGCCUGCcuGUCcCGGGCGGu -3'
miRNA:   3'- -CUuaAGCuCUGGGCG--UAGuGCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 17386 0.69 0.917716
Target:  5'- ---gUCGAgGACCuCGUcaacAUCAUGGACGGc -3'
miRNA:   3'- cuuaAGCU-CUGG-GCG----UAGUGCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 22760 0.69 0.917099
Target:  5'- ---cUCGAGugUCGCAUUgACGAccccaccACGGg -3'
miRNA:   3'- cuuaAGCUCugGGCGUAG-UGCU-------UGCC- -5'
18492 3' -50.1 NC_004681.1 + 28768 0.69 0.902835
Target:  5'- gGAGUUCGuGGCCCaGCucaAUCacaacaacacgccaGCGAACGGc -3'
miRNA:   3'- -CUUAAGCuCUGGG-CG---UAG--------------UGCUUGCC- -5'
18492 3' -50.1 NC_004681.1 + 28428 0.69 0.89802
Target:  5'- ----aCGAGGacaucguucgUCUGCGUCACGAugGGc -3'
miRNA:   3'- cuuaaGCUCU----------GGGCGUAGUGCUugCC- -5'
18492 3' -50.1 NC_004681.1 + 60178 0.69 0.89802
Target:  5'- cGAAUcUCGAaGCCCGCGUCcuCGAuggccACGGu -3'
miRNA:   3'- -CUUA-AGCUcUGGGCGUAGu-GCU-----UGCC- -5'
18492 3' -50.1 NC_004681.1 + 8858 0.7 0.875919
Target:  5'- ---cUCGuAGACCCGCGcgaacucuUCGCuggaGAACGGg -3'
miRNA:   3'- cuuaAGC-UCUGGGCGU--------AGUG----CUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.