Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18492 | 3' | -50.1 | NC_004681.1 | + | 53426 | 1.11 | 0.00423 |
Target: 5'- cGAAUUCGAGACCCGCAUCACGAACGGu -3' miRNA: 3'- -CUUAAGCUCUGGGCGUAGUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 48237 | 0.66 | 0.977593 |
Target: 5'- ----cCGAGGCUCGCcaGUC-CGAuACGGg -3' miRNA: 3'- cuuaaGCUCUGGGCG--UAGuGCU-UGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 33366 | 0.66 | 0.977593 |
Target: 5'- ----cUGAGACcggCCGCGUCGCGcGCGc -3' miRNA: 3'- cuuaaGCUCUG---GGCGUAGUGCuUGCc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 60198 | 0.67 | 0.970218 |
Target: 5'- ---aUCGGcACCCGCcgCGCGGggaucacgccuagugGCGGa -3' miRNA: 3'- cuuaAGCUcUGGGCGuaGUGCU---------------UGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 62340 | 0.67 | 0.962 |
Target: 5'- ----aCGAGGCCCuGCGUUACGGcuucguggauCGGa -3' miRNA: 3'- cuuaaGCUCUGGG-CGUAGUGCUu---------GCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 53081 | 0.67 | 0.954044 |
Target: 5'- ---aUCGGGACCCGCgcuacaucgacGUCACugccugggauGAGCGa -3' miRNA: 3'- cuuaAGCUCUGGGCG-----------UAGUG----------CUUGCc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 48711 | 0.68 | 0.94012 |
Target: 5'- --cUUCGAGucGCCCGCgGUCaACGAGCu- -3' miRNA: 3'- cuuAAGCUC--UGGGCG-UAG-UGCUUGcc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 44747 | 0.68 | 0.934934 |
Target: 5'- cGAcgUCGAgGACUC-CcUCGCGGGCGGc -3' miRNA: 3'- -CUuaAGCU-CUGGGcGuAGUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 17386 | 0.69 | 0.917716 |
Target: 5'- ---gUCGAgGACCuCGUcaacAUCAUGGACGGc -3' miRNA: 3'- cuuaAGCU-CUGG-GCG----UAGUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 12457 | 0.75 | 0.616316 |
Target: 5'- ---gUCGAGGCCC-CGgcCACGAGCGGu -3' miRNA: 3'- cuuaAGCUCUGGGcGUa-GUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 55223 | 0.75 | 0.627328 |
Target: 5'- cGAAUUCGAGACCCG---CugGGACGc -3' miRNA: 3'- -CUUAAGCUCUGGGCguaGugCUUGCc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 49297 | 0.73 | 0.714714 |
Target: 5'- ----cCGAGGCgCGCAagGCGGGCGGu -3' miRNA: 3'- cuuaaGCUCUGgGCGUagUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 39164 | 0.72 | 0.777125 |
Target: 5'- ----cCGAGACCgGCAUC-CGGgccGCGGa -3' miRNA: 3'- cuuaaGCUCUGGgCGUAGuGCU---UGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 28768 | 0.69 | 0.902835 |
Target: 5'- gGAGUUCGuGGCCCaGCucaAUCacaacaacacgccaGCGAACGGc -3' miRNA: 3'- -CUUAAGCuCUGGG-CG---UAG--------------UGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 22760 | 0.69 | 0.917099 |
Target: 5'- ---cUCGAGugUCGCAUUgACGAccccaccACGGg -3' miRNA: 3'- cuuaAGCUCugGGCGUAG-UGCU-------UGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 14542 | 0.66 | 0.972057 |
Target: 5'- -cGUUCGcc-UCCGCcUCGCGGGCGGc -3' miRNA: 3'- cuUAAGCucuGGGCGuAGUGCUUGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 26173 | 0.75 | 0.605318 |
Target: 5'- cGAAUUCGGuuCCCGgGUCACGAACc- -3' miRNA: 3'- -CUUAAGCUcuGGGCgUAGUGCUUGcc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 16081 | 0.71 | 0.851551 |
Target: 5'- -----gGAGGCCaGCAUCugGAccGCGGg -3' miRNA: 3'- cuuaagCUCUGGgCGUAGugCU--UGCC- -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 33354 | 0.7 | 0.86804 |
Target: 5'- gGAAcugCGAgGACCCGCAUCACcuGCGc -3' miRNA: 3'- -CUUaa-GCU-CUGGGCGUAGUGcuUGCc -5' |
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18492 | 3' | -50.1 | NC_004681.1 | + | 8858 | 0.7 | 0.875919 |
Target: 5'- ---cUCGuAGACCCGCGcgaacucuUCGCuggaGAACGGg -3' miRNA: 3'- cuuaAGC-UCUGGGCGU--------AGUG----CUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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