miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18492 5' -52.9 NC_004681.1 + 65178 0.66 0.902394
Target:  5'- aGGCcgaCCUCGGCGaccacccgaGCGggGAUcgUGGAg -3'
miRNA:   3'- -UCG---GGAGCCGU---------UGCuuCUGuaGCUUg -5'
18492 5' -52.9 NC_004681.1 + 30852 0.66 0.902394
Target:  5'- aGGCCCUUGGagcccgcggacuCGAUGAGcauGcCGUCGAGCu -3'
miRNA:   3'- -UCGGGAGCC------------GUUGCUU---CuGUAGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 16081 0.66 0.902394
Target:  5'- cGCCCUCGGUGGCGucaccACcgCGGcgcGCa -3'
miRNA:   3'- uCGGGAGCCGUUGCuuc--UGuaGCU---UG- -5'
18492 5' -52.9 NC_004681.1 + 65271 0.66 0.902394
Target:  5'- uGGCgCUUGGCGGCGucguaguAGACcgaagcgCGGACa -3'
miRNA:   3'- -UCGgGAGCCGUUGCu------UCUGua-----GCUUG- -5'
18492 5' -52.9 NC_004681.1 + 36910 0.66 0.902394
Target:  5'- cGGCCCgCGGCGACaaaGAGGACugccuaGUC-AGCg -3'
miRNA:   3'- -UCGGGaGCCGUUG---CUUCUG------UAGcUUG- -5'
18492 5' -52.9 NC_004681.1 + 70466 0.66 0.902394
Target:  5'- uGGUCCUgCGGCcGCGcguAGACGUC-AGCc -3'
miRNA:   3'- -UCGGGA-GCCGuUGCu--UCUGUAGcUUG- -5'
18492 5' -52.9 NC_004681.1 + 16454 0.66 0.898277
Target:  5'- cGCCCUCGucgccacccaccgccGCAGCGGAGAUGgccugcUCGGc- -3'
miRNA:   3'- uCGGGAGC---------------CGUUGCUUCUGU------AGCUug -5'
18492 5' -52.9 NC_004681.1 + 47568 0.66 0.898277
Target:  5'- uGGCCgUCGcacGCGGCGAccugauggcacucguGGAgGUUGAGCa -3'
miRNA:   3'- -UCGGgAGC---CGUUGCU---------------UCUgUAGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 14583 0.66 0.898277
Target:  5'- cGCCUUCGGCAccggcaagcuggcugGCGAGuucgagucGACGggUGAGCg -3'
miRNA:   3'- uCGGGAGCCGU---------------UGCUU--------CUGUa-GCUUG- -5'
18492 5' -52.9 NC_004681.1 + 50159 0.66 0.895479
Target:  5'- cGaCCCgcaGGCAGuCGAuGGCGUCGGAg -3'
miRNA:   3'- uC-GGGag-CCGUU-GCUuCUGUAGCUUg -5'
18492 5' -52.9 NC_004681.1 + 17596 0.66 0.888299
Target:  5'- cGCCgugguaUCGGCGGCucGGGCG-CGGACg -3'
miRNA:   3'- uCGGg-----AGCCGUUGcuUCUGUaGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 12407 0.66 0.888299
Target:  5'- cGCUCgUCGGUgagccggugacgGACGAGGACggCGAAg -3'
miRNA:   3'- uCGGG-AGCCG------------UUGCUUCUGuaGCUUg -5'
18492 5' -52.9 NC_004681.1 + 52611 0.66 0.888299
Target:  5'- cAGCCaggCGGUAGCGAAaccgcaaucGACAU-GAGCu -3'
miRNA:   3'- -UCGGga-GCCGUUGCUU---------CUGUAgCUUG- -5'
18492 5' -52.9 NC_004681.1 + 20167 0.66 0.888299
Target:  5'- uGCCC-CGGCuGCGcucGGugAUCGAc- -3'
miRNA:   3'- uCGGGaGCCGuUGCu--UCugUAGCUug -5'
18492 5' -52.9 NC_004681.1 + 19465 0.66 0.888299
Target:  5'- cGCCCaggcCGGUGugGucGACccgGUCGAACu -3'
miRNA:   3'- uCGGGa---GCCGUugCuuCUG---UAGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 61908 0.66 0.880858
Target:  5'- uGGCgCUgUGGCAccGCGAGGACc-CGAACu -3'
miRNA:   3'- -UCGgGA-GCCGU--UGCUUCUGuaGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 13376 0.66 0.880858
Target:  5'- cGCCCUCGGacuCGAUGGccuGGACG-CGGAa -3'
miRNA:   3'- uCGGGAGCC---GUUGCU---UCUGUaGCUUg -5'
18492 5' -52.9 NC_004681.1 + 62354 0.66 0.880858
Target:  5'- uGCCCcCGGCGcgguggACGAAGACcuuggCGAuGCg -3'
miRNA:   3'- uCGGGaGCCGU------UGCUUCUGua---GCU-UG- -5'
18492 5' -52.9 NC_004681.1 + 25088 0.66 0.880858
Target:  5'- cAGCcuCCUCGGCAccuCGGuuGGCcgCGGACc -3'
miRNA:   3'- -UCG--GGAGCCGUu--GCUu-CUGuaGCUUG- -5'
18492 5' -52.9 NC_004681.1 + 57160 0.66 0.873163
Target:  5'- aAGCuCCUCGaUAGCGggGAaGUCGAc- -3'
miRNA:   3'- -UCG-GGAGCcGUUGCuuCUgUAGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.