miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18493 3' -46.1 NC_004681.1 + 4044 0.66 0.998901
Target:  5'- uGGaGGAGGACCCGUggaaCGAgGAgUGCu -3'
miRNA:   3'- gUCaCUUCUUGGGCAa---GUUgUUgAUG- -5'
18493 3' -46.1 NC_004681.1 + 21446 0.66 0.998643
Target:  5'- cCGGU--AGGACCCGU--GACGccGCUGCg -3'
miRNA:   3'- -GUCAcuUCUUGGGCAagUUGU--UGAUG- -5'
18493 3' -46.1 NC_004681.1 + 25832 0.66 0.998643
Target:  5'- uGGUGGAGAugCCGUaggUCuuCAGgUAg -3'
miRNA:   3'- gUCACUUCUugGGCA---AGuuGUUgAUg -5'
18493 3' -46.1 NC_004681.1 + 51580 0.66 0.998643
Target:  5'- aGGUGGAGcAACCCac-CGGCAACggGCu -3'
miRNA:   3'- gUCACUUC-UUGGGcaaGUUGUUGa-UG- -5'
18493 3' -46.1 NC_004681.1 + 23210 0.66 0.998336
Target:  5'- --cUGGAGGGCgUGUUCGGCGGCa-- -3'
miRNA:   3'- gucACUUCUUGgGCAAGUUGUUGaug -5'
18493 3' -46.1 NC_004681.1 + 12780 0.66 0.998125
Target:  5'- uCGGUGGGucGCuCCGUUCucacggcgaccgacGCAGCUGCa -3'
miRNA:   3'- -GUCACUUcuUG-GGCAAGu-------------UGUUGAUG- -5'
18493 3' -46.1 NC_004681.1 + 56544 0.66 0.997972
Target:  5'- gGGUGAAGAcCCCGgacuacgagUUCGAUGucguCUACg -3'
miRNA:   3'- gUCACUUCUuGGGC---------AAGUUGUu---GAUG- -5'
18493 3' -46.1 NC_004681.1 + 18658 0.66 0.997972
Target:  5'- ---aGGAGAACCC--UCAGCAGCa-- -3'
miRNA:   3'- gucaCUUCUUGGGcaAGUUGUUGaug -5'
18493 3' -46.1 NC_004681.1 + 48936 0.66 0.997972
Target:  5'- aGGUGuugcugauguGGAACCCGgacuugUCGACGGCa-- -3'
miRNA:   3'- gUCACu---------UCUUGGGCa-----AGUUGUUGaug -5'
18493 3' -46.1 NC_004681.1 + 61340 0.67 0.997449
Target:  5'- aGGUGGAGGuagacgagaucgGCCCGUcgcugcggugggCAACAGCUcGCg -3'
miRNA:   3'- gUCACUUCU------------UGGGCAa-----------GUUGUUGA-UG- -5'
18493 3' -46.1 NC_004681.1 + 68813 0.67 0.995783
Target:  5'- uGGUGAAGGACCCGgg-GAguAcCUACc -3'
miRNA:   3'- gUCACUUCUUGGGCaagUUguU-GAUG- -5'
18493 3' -46.1 NC_004681.1 + 53888 0.68 0.994116
Target:  5'- gGGUGAGGAAUCUGcccauugugUCGACGGCg-- -3'
miRNA:   3'- gUCACUUCUUGGGCa--------AGUUGUUGaug -5'
18493 3' -46.1 NC_004681.1 + 32652 0.68 0.994116
Target:  5'- aCGGUGGcgGGGACCUGggcCGACAugUGg -3'
miRNA:   3'- -GUCACU--UCUUGGGCaa-GUUGUugAUg -5'
18493 3' -46.1 NC_004681.1 + 36779 0.68 0.990663
Target:  5'- --aUGAGGAGCCCGUggugauGCUGCu -3'
miRNA:   3'- gucACUUCUUGGGCAaguuguUGAUG- -5'
18493 3' -46.1 NC_004681.1 + 29430 0.68 0.989211
Target:  5'- uGGcGAGGucGCCuCGggCAACGGCUACa -3'
miRNA:   3'- gUCaCUUCu-UGG-GCaaGUUGUUGAUG- -5'
18493 3' -46.1 NC_004681.1 + 9225 0.69 0.983787
Target:  5'- uGGUGAuGAACCCGcgCGACugggagcucCUGCg -3'
miRNA:   3'- gUCACUuCUUGGGCaaGUUGuu-------GAUG- -5'
18493 3' -46.1 NC_004681.1 + 36111 0.7 0.979161
Target:  5'- cCGGUGAAGGuACCCag-CAACGACg-- -3'
miRNA:   3'- -GUCACUUCU-UGGGcaaGUUGUUGaug -5'
18493 3' -46.1 NC_004681.1 + 12439 0.72 0.940838
Target:  5'- aGGUGAAGGGCgUGUUCGGCGAg--- -3'
miRNA:   3'- gUCACUUCUUGgGCAAGUUGUUgaug -5'
18493 3' -46.1 NC_004681.1 + 22914 0.75 0.809413
Target:  5'- uGGUGGccguucagguGGAACCCGUuggCGACAACUGg -3'
miRNA:   3'- gUCACU----------UCUUGGGCAa--GUUGUUGAUg -5'
18493 3' -46.1 NC_004681.1 + 10981 0.81 0.519296
Target:  5'- -cGUGGAGAACCCGg---GCGACUACg -3'
miRNA:   3'- guCACUUCUUGGGCaaguUGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.