miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18493 5' -51.8 NC_004681.1 + 6106 0.66 0.947196
Target:  5'- gCGACACcAU-GGC-GAUUCCgaUUGCCCg -3'
miRNA:   3'- -GCUGUGuUAcCCGuCUAAGG--AGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 22812 0.66 0.94242
Target:  5'- aCGGCAUcgccgGGGCGaccccgccuccGAUgaUCCUCAUCCc -3'
miRNA:   3'- -GCUGUGuua--CCCGU-----------CUA--AGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 15758 0.66 0.93205
Target:  5'- gGGCAUccaGAUGGGC-GAgaCCUUucuGCCCu -3'
miRNA:   3'- gCUGUG---UUACCCGuCUaaGGAG---UGGG- -5'
18493 5' -51.8 NC_004681.1 + 46003 0.66 0.931503
Target:  5'- uGAU-CGGUGGGCGG--UCCUCgugcauuACCCc -3'
miRNA:   3'- gCUGuGUUACCCGUCuaAGGAG-------UGGG- -5'
18493 5' -51.8 NC_004681.1 + 35387 0.66 0.925877
Target:  5'- aGcCAcCGGUGGcCGGAUUCCUCgacgggcACCCa -3'
miRNA:   3'- gCuGU-GUUACCcGUCUAAGGAG-------UGGG- -5'
18493 5' -51.8 NC_004681.1 + 49303 0.66 0.920579
Target:  5'- -cGCGCAAggcGGGCGGucugcacaaCCUCACCg -3'
miRNA:   3'- gcUGUGUUa--CCCGUCuaa------GGAGUGGg -5'
18493 5' -51.8 NC_004681.1 + 24994 0.66 0.918152
Target:  5'- gCGGCACAGgcgucggcggcaaGGGUGGcgacacggUCUUCACCCu -3'
miRNA:   3'- -GCUGUGUUa------------CCCGUCua------AGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 9951 0.67 0.908007
Target:  5'- ---uGCGGUGGGCcGGUucgUCUUCGCCUu -3'
miRNA:   3'- gcugUGUUACCCGuCUA---AGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 19110 0.67 0.908007
Target:  5'- cCGGCGCGAgguucgcagcUGGGUGGAcgCCUgGaCCCc -3'
miRNA:   3'- -GCUGUGUU----------ACCCGUCUaaGGAgU-GGG- -5'
18493 5' -51.8 NC_004681.1 + 45759 0.67 0.908007
Target:  5'- gGACAaCGGUGGGCG----UCUUGCCCu -3'
miRNA:   3'- gCUGU-GUUACCCGUcuaaGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 3029 0.67 0.887123
Target:  5'- uCGGCGCGcguGGCGGug-CCgUCGCCCa -3'
miRNA:   3'- -GCUGUGUuacCCGUCuaaGG-AGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 12834 0.67 0.887123
Target:  5'- uGGCGguAUGGGUguggUCCUCAgCCg -3'
miRNA:   3'- gCUGUguUACCCGucuaAGGAGUgGG- -5'
18493 5' -51.8 NC_004681.1 + 990 0.68 0.879636
Target:  5'- gGACGCca-GGGCGGcUUCC-CGCUCu -3'
miRNA:   3'- gCUGUGuuaCCCGUCuAAGGaGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 64776 0.68 0.855676
Target:  5'- ---gGCGGUGGGCAuuccGGUcgUCUCGCCCc -3'
miRNA:   3'- gcugUGUUACCCGU----CUAa-GGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 25908 0.68 0.855676
Target:  5'- gCGACAuCGAccGGGCcaacgagaucaAGAUUCgUCACCUg -3'
miRNA:   3'- -GCUGU-GUUa-CCCG-----------UCUAAGgAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 54357 0.68 0.847213
Target:  5'- -uGCGCaAGUGGGCAcg--CCUCGCCa -3'
miRNA:   3'- gcUGUG-UUACCCGUcuaaGGAGUGGg -5'
18493 5' -51.8 NC_004681.1 + 25066 0.68 0.847213
Target:  5'- gCGGCGC---GGGCGGca-CCUCGCUCa -3'
miRNA:   3'- -GCUGUGuuaCCCGUCuaaGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 2558 0.69 0.82962
Target:  5'- uCGACGCGgccgaagaGUGGGCGGAcgaugUCgUCGCgCu -3'
miRNA:   3'- -GCUGUGU--------UACCCGUCUa----AGgAGUGgG- -5'
18493 5' -51.8 NC_004681.1 + 26850 0.69 0.820507
Target:  5'- gGAcCGCAGUGGGCcGGUcCC-CACCg -3'
miRNA:   3'- gCU-GUGUUACCCGuCUAaGGaGUGGg -5'
18493 5' -51.8 NC_004681.1 + 11414 0.69 0.801701
Target:  5'- uGACAUca-GGGCgcagucGGAgaCCUCACCCu -3'
miRNA:   3'- gCUGUGuuaCCCG------UCUaaGGAGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.