miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18493 5' -51.8 NC_004681.1 + 53787 1.13 0.001777
Target:  5'- uCGACACAAUGGGCAGAUUCCUCACCCa -3'
miRNA:   3'- -GCUGUGUUACCCGUCUAAGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 50915 0.73 0.588282
Target:  5'- gGugGCGGUGGGCGGGgucacagUUCCUgUugCCa -3'
miRNA:   3'- gCugUGUUACCCGUCU-------AAGGA-GugGG- -5'
18493 5' -51.8 NC_004681.1 + 24081 0.73 0.600312
Target:  5'- uGGCGCcGUGGGCcagcaAGGUUCCggCGCCa -3'
miRNA:   3'- gCUGUGuUACCCG-----UCUAAGGa-GUGGg -5'
18493 5' -51.8 NC_004681.1 + 62209 0.72 0.644242
Target:  5'- gGACAUggUGGGCuGGUaCCgcCACCUg -3'
miRNA:   3'- gCUGUGuuACCCGuCUAaGGa-GUGGG- -5'
18493 5' -51.8 NC_004681.1 + 63436 0.72 0.66618
Target:  5'- -cACGCGAauuUGGGCGGAUUUUUCAUCg -3'
miRNA:   3'- gcUGUGUU---ACCCGUCUAAGGAGUGGg -5'
18493 5' -51.8 NC_004681.1 + 50563 0.72 0.66618
Target:  5'- gGACACGGUcGGGguGgg-CgUCGCCCa -3'
miRNA:   3'- gCUGUGUUA-CCCguCuaaGgAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 44092 0.71 0.709587
Target:  5'- --cCGCAGUGGuGCGGAUguuugacgUCCUCGgCCa -3'
miRNA:   3'- gcuGUGUUACC-CGUCUA--------AGGAGUgGG- -5'
18493 5' -51.8 NC_004681.1 + 1710 0.71 0.73088
Target:  5'- -uGCAgGAUGGGCGGGaa--UCACCCa -3'
miRNA:   3'- gcUGUgUUACCCGUCUaaggAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 12190 0.71 0.741384
Target:  5'- aGACGCGc-GGGCGGA--CCUCGgCCa -3'
miRNA:   3'- gCUGUGUuaCCCGUCUaaGGAGUgGG- -5'
18493 5' -51.8 NC_004681.1 + 70381 0.7 0.792027
Target:  5'- aGACACGGaGGGCAuGAcagUCCUCcguGCCa -3'
miRNA:   3'- gCUGUGUUaCCCGU-CUa--AGGAG---UGGg -5'
18493 5' -51.8 NC_004681.1 + 11414 0.69 0.801701
Target:  5'- uGACAUca-GGGCgcagucGGAgaCCUCACCCu -3'
miRNA:   3'- gCUGUGuuaCCCG------UCUaaGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 26850 0.69 0.820507
Target:  5'- gGAcCGCAGUGGGCcGGUcCC-CACCg -3'
miRNA:   3'- gCU-GUGUUACCCGuCUAaGGaGUGGg -5'
18493 5' -51.8 NC_004681.1 + 2558 0.69 0.82962
Target:  5'- uCGACGCGgccgaagaGUGGGCGGAcgaugUCgUCGCgCu -3'
miRNA:   3'- -GCUGUGU--------UACCCGUCUa----AGgAGUGgG- -5'
18493 5' -51.8 NC_004681.1 + 54357 0.68 0.847213
Target:  5'- -uGCGCaAGUGGGCAcg--CCUCGCCa -3'
miRNA:   3'- gcUGUG-UUACCCGUcuaaGGAGUGGg -5'
18493 5' -51.8 NC_004681.1 + 25066 0.68 0.847213
Target:  5'- gCGGCGC---GGGCGGca-CCUCGCUCa -3'
miRNA:   3'- -GCUGUGuuaCCCGUCuaaGGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 64776 0.68 0.855676
Target:  5'- ---gGCGGUGGGCAuuccGGUcgUCUCGCCCc -3'
miRNA:   3'- gcugUGUUACCCGU----CUAa-GGAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 25908 0.68 0.855676
Target:  5'- gCGACAuCGAccGGGCcaacgagaucaAGAUUCgUCACCUg -3'
miRNA:   3'- -GCUGU-GUUa-CCCG-----------UCUAAGgAGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 990 0.68 0.879636
Target:  5'- gGACGCca-GGGCGGcUUCC-CGCUCu -3'
miRNA:   3'- gCUGUGuuaCCCGUCuAAGGaGUGGG- -5'
18493 5' -51.8 NC_004681.1 + 12834 0.67 0.887123
Target:  5'- uGGCGguAUGGGUguggUCCUCAgCCg -3'
miRNA:   3'- gCUGUguUACCCGucuaAGGAGUgGG- -5'
18493 5' -51.8 NC_004681.1 + 3029 0.67 0.887123
Target:  5'- uCGGCGCGcguGGCGGug-CCgUCGCCCa -3'
miRNA:   3'- -GCUGUGUuacCCGUCuaaGG-AGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.