Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18493 | 5' | -51.8 | NC_004681.1 | + | 70381 | 0.7 | 0.792027 |
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Target: 5'- aGACACGGaGGGCAuGAcagUCCUCcguGCCa -3' miRNA: 3'- gCUGUGUUaCCCGU-CUa--AGGAG---UGGg -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 12190 | 0.71 | 0.741384 |
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Target: 5'- aGACGCGc-GGGCGGA--CCUCGgCCa -3' miRNA: 3'- gCUGUGUuaCCCGUCUaaGGAGUgGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 1710 | 0.71 | 0.73088 |
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Target: 5'- -uGCAgGAUGGGCGGGaa--UCACCCa -3' miRNA: 3'- gcUGUgUUACCCGUCUaaggAGUGGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 44092 | 0.71 | 0.709587 |
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Target: 5'- --cCGCAGUGGuGCGGAUguuugacgUCCUCGgCCa -3' miRNA: 3'- gcuGUGUUACC-CGUCUA--------AGGAGUgGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 63436 | 0.72 | 0.66618 |
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Target: 5'- -cACGCGAauuUGGGCGGAUUUUUCAUCg -3' miRNA: 3'- gcUGUGUU---ACCCGUCUAAGGAGUGGg -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 50563 | 0.72 | 0.66618 |
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Target: 5'- gGACACGGUcGGGguGgg-CgUCGCCCa -3' miRNA: 3'- gCUGUGUUA-CCCguCuaaGgAGUGGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 62209 | 0.72 | 0.644242 |
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Target: 5'- gGACAUggUGGGCuGGUaCCgcCACCUg -3' miRNA: 3'- gCUGUGuuACCCGuCUAaGGa-GUGGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 24081 | 0.73 | 0.600312 |
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Target: 5'- uGGCGCcGUGGGCcagcaAGGUUCCggCGCCa -3' miRNA: 3'- gCUGUGuUACCCG-----UCUAAGGa-GUGGg -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 50915 | 0.73 | 0.588282 |
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Target: 5'- gGugGCGGUGGGCGGGgucacagUUCCUgUugCCa -3' miRNA: 3'- gCugUGUUACCCGUCU-------AAGGA-GugGG- -5' |
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| 18493 | 5' | -51.8 | NC_004681.1 | + | 53787 | 1.13 | 0.001777 |
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Target: 5'- uCGACACAAUGGGCAGAUUCCUCACCCa -3' miRNA: 3'- -GCUGUGUUACCCGUCUAAGGAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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