miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 53434 0.66 0.75736
Target:  5'- aGAcCCGCAUCACGAacgguCUGaUCGAAGcccucGGCa -3'
miRNA:   3'- -CU-GGCGUAGUGCU-----GGC-GGCUUCu----CCG- -5'
18494 3' -56.8 NC_004681.1 + 14368 0.66 0.75736
Target:  5'- -uCCGCccgCAUGAUCGCCGcGGAGaaccGCa -3'
miRNA:   3'- cuGGCGua-GUGCUGGCGGCuUCUC----CG- -5'
18494 3' -56.8 NC_004681.1 + 61207 0.66 0.75736
Target:  5'- cGCUGCAccaucuggCGCGacGCCGCCGAGaacGuGGCg -3'
miRNA:   3'- cUGGCGUa-------GUGC--UGGCGGCUU---CuCCG- -5'
18494 3' -56.8 NC_004681.1 + 65961 0.66 0.75736
Target:  5'- -uCCGCuacggCACGAagGCCGAGaAGGCu -3'
miRNA:   3'- cuGGCGua---GUGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16583 0.66 0.75736
Target:  5'- uGCCGgGgCGCGG-CGCCGAguaguccgugGGGGGCu -3'
miRNA:   3'- cUGGCgUaGUGCUgGCGGCU----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 39785 0.66 0.75736
Target:  5'- -cCCGCcgCGCGACCaucgccucccacGCCucguGGGGCa -3'
miRNA:   3'- cuGGCGuaGUGCUGG------------CGGcuu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 72804 0.66 0.75736
Target:  5'- uACCGUGUCACuACCGCgCGcGGAGa- -3'
miRNA:   3'- cUGGCGUAGUGcUGGCG-GCuUCUCcg -5'
18494 3' -56.8 NC_004681.1 + 19041 0.66 0.751394
Target:  5'- cGACUcCAUCuAUGAauCCGCCGAGcucgacuucacugucGAGGCa -3'
miRNA:   3'- -CUGGcGUAG-UGCU--GGCGGCUU---------------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 65832 0.66 0.747394
Target:  5'- cACCGUuccagGUgACGACgaugucggccuCGCUGAGGAGGUc -3'
miRNA:   3'- cUGGCG-----UAgUGCUG-----------GCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 12056 0.66 0.747394
Target:  5'- -uCgGCGUUgACGGCCGCaUGGAcGAGGCc -3'
miRNA:   3'- cuGgCGUAG-UGCUGGCG-GCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 38963 0.66 0.73732
Target:  5'- uGACCGCGgugaagcaguUCAugcgcugggUGGCCGaCGAGGaAGGCg -3'
miRNA:   3'- -CUGGCGU----------AGU---------GCUGGCgGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 68911 0.66 0.73732
Target:  5'- uGACCauCGUCACGGCCGCCgccaccGAAGAc-- -3'
miRNA:   3'- -CUGGc-GUAGUGCUGGCGG------CUUCUccg -5'
18494 3' -56.8 NC_004681.1 + 12673 0.66 0.73732
Target:  5'- -cCCcCAUCACcGCCGCgGAgcucaaccguauGGAGGCu -3'
miRNA:   3'- cuGGcGUAGUGcUGGCGgCU------------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44676 0.66 0.73732
Target:  5'- cGGCCGCGagCGCGGCgGC-GAuGAGGg -3'
miRNA:   3'- -CUGGCGUa-GUGCUGgCGgCUuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 70943 0.66 0.73732
Target:  5'- aGGCaUGC-UCGCGGCCGCUGAgcguGGAGa- -3'
miRNA:   3'- -CUG-GCGuAGUGCUGGCGGCU----UCUCcg -5'
18494 3' -56.8 NC_004681.1 + 39328 0.66 0.727148
Target:  5'- cGCCGCGcuggaCACGGCU-CCGAGG-GGCc -3'
miRNA:   3'- cUGGCGUa----GUGCUGGcGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 17668 0.66 0.727148
Target:  5'- uGGCCGCggcGUCACuGCCccaGuuGAAGGGGg -3'
miRNA:   3'- -CUGGCG---UAGUGcUGG---CggCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 68133 0.66 0.727148
Target:  5'- gGACCG-AUCAUGAaccagcucUUGCCG-GGAGGCc -3'
miRNA:   3'- -CUGGCgUAGUGCU--------GGCGGCuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 60380 0.66 0.727148
Target:  5'- cGCUGCAUCA-G-UCGCCGggGcagugaccAGGCg -3'
miRNA:   3'- cUGGCGUAGUgCuGGCGGCuuC--------UCCG- -5'
18494 3' -56.8 NC_004681.1 + 16714 0.66 0.716887
Target:  5'- cGCCGCcuccAUCGCGGCCugcaguugcagGUCGAccggggacgccGGGGGCu -3'
miRNA:   3'- cUGGCG----UAGUGCUGG-----------CGGCU-----------UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.