miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 12056 0.66 0.747394
Target:  5'- -uCgGCGUUgACGGCCGCaUGGAcGAGGCc -3'
miRNA:   3'- cuGgCGUAG-UGCUGGCG-GCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 4819 0.66 0.716887
Target:  5'- cGACCGCGaCAUGGCUGCC-AAGc-GCa -3'
miRNA:   3'- -CUGGCGUaGUGCUGGCGGcUUCucCG- -5'
18494 3' -56.8 NC_004681.1 + 39328 0.66 0.727148
Target:  5'- cGCCGCGcuggaCACGGCU-CCGAGG-GGCc -3'
miRNA:   3'- cUGGCGUa----GUGCUGGcGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 12673 0.66 0.73732
Target:  5'- -cCCcCAUCACcGCCGCgGAgcucaaccguauGGAGGCu -3'
miRNA:   3'- cuGGcGUAGUGcUGGCGgCU------------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 5960 0.66 0.705511
Target:  5'- uGACCGCGguggagaugcaguUCAuCGAacCCGCCagcucaaccgcGAAGAGGUc -3'
miRNA:   3'- -CUGGCGU-------------AGU-GCU--GGCGG-----------CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 296 0.66 0.706549
Target:  5'- aACUGuCAUCAcCGAcCCGCgGAAGcacGGGCu -3'
miRNA:   3'- cUGGC-GUAGU-GCU-GGCGgCUUC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 68911 0.66 0.73732
Target:  5'- uGACCauCGUCACGGCCGCCgccaccGAAGAc-- -3'
miRNA:   3'- -CUGGc-GUAGUGCUGGCGG------CUUCUccg -5'
18494 3' -56.8 NC_004681.1 + 38963 0.66 0.73732
Target:  5'- uGACCGCGgugaagcaguUCAugcgcugggUGGCCGaCGAGGaAGGCg -3'
miRNA:   3'- -CUGGCGU----------AGU---------GCUGGCgGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 19041 0.66 0.751394
Target:  5'- cGACUcCAUCuAUGAauCCGCCGAGcucgacuucacugucGAGGCa -3'
miRNA:   3'- -CUGGcGUAG-UGCU--GGCGGCUU---------------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 9487 0.66 0.716887
Target:  5'- uGAUgGCAaggUCACcguGCgCGCCGAAGAGcGCc -3'
miRNA:   3'- -CUGgCGU---AGUGc--UG-GCGGCUUCUC-CG- -5'
18494 3' -56.8 NC_004681.1 + 40152 0.66 0.706549
Target:  5'- aGGCCGCG--ACG-CCGCaGAucGAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGgCUu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 51515 0.66 0.706549
Target:  5'- cACCGaCGcCACcACCuCCGAAGAGGUc -3'
miRNA:   3'- cUGGC-GUaGUGcUGGcGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61207 0.66 0.75736
Target:  5'- cGCUGCAccaucuggCGCGacGCCGCCGAGaacGuGGCg -3'
miRNA:   3'- cUGGCGUa-------GUGC--UGGCGGCUU---CuCCG- -5'
18494 3' -56.8 NC_004681.1 + 53434 0.66 0.75736
Target:  5'- aGAcCCGCAUCACGAacgguCUGaUCGAAGcccucGGCa -3'
miRNA:   3'- -CU-GGCGUAGUGCU-----GGC-GGCUUCu----CCG- -5'
18494 3' -56.8 NC_004681.1 + 63051 0.66 0.706549
Target:  5'- cGCCGCcgcCACcACCGCCGAAGGagauGGa -3'
miRNA:   3'- cUGGCGua-GUGcUGGCGGCUUCU----CCg -5'
18494 3' -56.8 NC_004681.1 + 16583 0.66 0.75736
Target:  5'- uGCCGgGgCGCGG-CGCCGAguaguccgugGGGGGCu -3'
miRNA:   3'- cUGGCgUaGUGCUgGCGGCU----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 39785 0.66 0.75736
Target:  5'- -cCCGCcgCGCGACCaucgccucccacGCCucguGGGGCa -3'
miRNA:   3'- cuGGCGuaGUGCUGG------------CGGcuu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 48874 0.66 0.706549
Target:  5'- cGACgGCcUCACuccagguguaGCCGCCGuccuGGAGGUg -3'
miRNA:   3'- -CUGgCGuAGUGc---------UGGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 65961 0.66 0.75736
Target:  5'- -uCCGCuacggCACGAagGCCGAGaAGGCu -3'
miRNA:   3'- cuGGCGua---GUGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 67925 0.66 0.706549
Target:  5'- cGCCGCGgagaugacgCACGA-CGCUGucauAGGGGCc -3'
miRNA:   3'- cUGGCGUa--------GUGCUgGCGGCu---UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.