Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18494 | 3' | -56.8 | NC_004681.1 | + | 67925 | 0.66 | 0.706549 |
Target: 5'- cGCCGCGgagaugacgCACGA-CGCUGucauAGGGGCc -3' miRNA: 3'- cUGGCGUa--------GUGCUgGCGGCu---UCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 30349 | 0.66 | 0.716887 |
Target: 5'- cGCCGUA-C-CGGCCGCCGccgcuGuGGCg -3' miRNA: 3'- cUGGCGUaGuGCUGGCGGCuu---CuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 39785 | 0.66 | 0.75736 |
Target: 5'- -cCCGCcgCGCGACCaucgccucccacGCCucguGGGGCa -3' miRNA: 3'- cuGGCGuaGUGCUGG------------CGGcuu-CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 65961 | 0.66 | 0.75736 |
Target: 5'- -uCCGCuacggCACGAagGCCGAGaAGGCu -3' miRNA: 3'- cuGGCGua---GUGCUggCGGCUUcUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 61207 | 0.66 | 0.75736 |
Target: 5'- cGCUGCAccaucuggCGCGacGCCGCCGAGaacGuGGCg -3' miRNA: 3'- cUGGCGUa-------GUGC--UGGCGGCUU---CuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 14368 | 0.66 | 0.75736 |
Target: 5'- -uCCGCccgCAUGAUCGCCGcGGAGaaccGCa -3' miRNA: 3'- cuGGCGua-GUGCUGGCGGCuUCUC----CG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 53434 | 0.66 | 0.75736 |
Target: 5'- aGAcCCGCAUCACGAacgguCUGaUCGAAGcccucGGCa -3' miRNA: 3'- -CU-GGCGUAGUGCU-----GGC-GGCUUCu----CCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 19041 | 0.66 | 0.751394 |
Target: 5'- cGACUcCAUCuAUGAauCCGCCGAGcucgacuucacugucGAGGCa -3' miRNA: 3'- -CUGGcGUAG-UGCU--GGCGGCUU---------------CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 44676 | 0.66 | 0.73732 |
Target: 5'- cGGCCGCGagCGCGGCgGC-GAuGAGGg -3' miRNA: 3'- -CUGGCGUa-GUGCUGgCGgCUuCUCCg -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 16714 | 0.66 | 0.716887 |
Target: 5'- cGCCGCcuccAUCGCGGCCugcaguugcagGUCGAccggggacgccGGGGGCu -3' miRNA: 3'- cUGGCG----UAGUGCUGG-----------CGGCU-----------UCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 35368 | 0.66 | 0.713793 |
Target: 5'- cAUCGC-UCACGAggcCCGCUGGGugucgggauggagcGAGGCg -3' miRNA: 3'- cUGGCGuAGUGCU---GGCGGCUU--------------CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 63051 | 0.66 | 0.706549 |
Target: 5'- cGCCGCcgcCACcACCGCCGAAGGagauGGa -3' miRNA: 3'- cUGGCGua-GUGcUGGCGGCUUCU----CCg -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 48874 | 0.66 | 0.706549 |
Target: 5'- cGACgGCcUCACuccagguguaGCCGCCGuccuGGAGGUg -3' miRNA: 3'- -CUGgCGuAGUGc---------UGGCGGCu---UCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 39552 | 0.67 | 0.696142 |
Target: 5'- cGACCGCuacAUCAagaGcGCgGCCGAGGAGcucGCa -3' miRNA: 3'- -CUGGCG---UAGUg--C-UGgCGGCUUCUC---CG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 10765 | 0.67 | 0.696142 |
Target: 5'- uGCaCGCG--ACGGCCGCgGGcaccGGGGGCg -3' miRNA: 3'- cUG-GCGUagUGCUGGCGgCU----UCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 10960 | 0.67 | 0.685679 |
Target: 5'- aGGCCaGCGUgA--ACCGCgGGAGAGGUc -3' miRNA: 3'- -CUGG-CGUAgUgcUGGCGgCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 46778 | 0.67 | 0.685679 |
Target: 5'- cACgGCGUCACGgucaucccGCgCGCCGucGAGGa -3' miRNA: 3'- cUGgCGUAGUGC--------UG-GCGGCuuCUCCg -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 57337 | 0.67 | 0.685679 |
Target: 5'- cGCCGCAagcUCGCGuACCG-CGggGAgccccaagGGCu -3' miRNA: 3'- cUGGCGU---AGUGC-UGGCgGCuuCU--------CCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 39038 | 0.67 | 0.696142 |
Target: 5'- aGCCGCAgaugCACGGUgGCCGGuugcAGGCu -3' miRNA: 3'- cUGGCGUa---GUGCUGgCGGCUuc--UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 58772 | 0.67 | 0.685679 |
Target: 5'- cGAUgGUGUCACGcgcACCGUCGAGGcGcGCg -3' miRNA: 3'- -CUGgCGUAGUGC---UGGCGGCUUCuC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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