Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18494 | 3' | -56.8 | NC_004681.1 | + | 62128 | 0.67 | 0.696142 |
Target: 5'- cGAgCGCAUCAuCGGCC-CCGA---GGCg -3' miRNA: 3'- -CUgGCGUAGU-GCUGGcGGCUucuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 32863 | 0.67 | 0.654042 |
Target: 5'- cGGCCcaGCGgauugC-CGACCggGCCGAAcGAGGCg -3' miRNA: 3'- -CUGG--CGUa----GuGCUGG--CGGCUU-CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 7221 | 0.67 | 0.664619 |
Target: 5'- cACCGCAUCcCGGuuGgaGggGAuGGCg -3' miRNA: 3'- cUGGCGUAGuGCUggCggCuuCU-CCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 39038 | 0.67 | 0.696142 |
Target: 5'- aGCCGCAgaugCACGGUgGCCGGuugcAGGCu -3' miRNA: 3'- cUGGCGUa---GUGCUGgCGGCUuc--UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 58772 | 0.67 | 0.685679 |
Target: 5'- cGAUgGUGUCACGcgcACCGUCGAGGcGcGCg -3' miRNA: 3'- -CUGgCGUAGUGC---UGGCGGCUUCuC-CG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 40242 | 0.68 | 0.63284 |
Target: 5'- uGCgGCGUCGCGGCCuGCCugucccGGGCg -3' miRNA: 3'- cUGgCGUAGUGCUGG-CGGcuuc--UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 51189 | 0.68 | 0.594717 |
Target: 5'- aGGCCGuCGUCuugggcGCucuggacuucucucaGGCCGUCGAGGAGGUc -3' miRNA: 3'- -CUGGC-GUAG------UG---------------CUGGCGGCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 9088 | 0.68 | 0.621174 |
Target: 5'- uGGCCGCGUCgucaccgGCG-CCGCUGGcucGGGCu -3' miRNA: 3'- -CUGGCGUAG-------UGCuGGCGGCUuc-UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 17807 | 0.68 | 0.611636 |
Target: 5'- aGGCCGaCAUCaacGCGGCgGCCGcgcaAGGCa -3' miRNA: 3'- -CUGGC-GUAG---UGCUGgCGGCuuc-UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 44585 | 0.68 | 0.601054 |
Target: 5'- cGCCGCGcUCGCGGCCGCCGc------ -3' miRNA: 3'- cUGGCGU-AGUGCUGGCGGCuucuccg -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 30787 | 0.68 | 0.637083 |
Target: 5'- cGGCCGCGcCAUGACUGUCGAcaacuccuacgccacGGccuGGGCc -3' miRNA: 3'- -CUGGCGUaGUGCUGGCGGCU---------------UC---UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 61858 | 0.68 | 0.590498 |
Target: 5'- uGGCCG-AUgGCGGCCGCgGucuGGuGGCg -3' miRNA: 3'- -CUGGCgUAgUGCUGGCGgCu--UCuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 65704 | 0.68 | 0.622234 |
Target: 5'- aGGCCGC-UCAUGACCuCCucagcGAGGCc -3' miRNA: 3'- -CUGGCGuAGUGCUGGcGGcuu--CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 52698 | 0.68 | 0.590498 |
Target: 5'- uACCGCcuggcugCAUGAgCUGCuCGAAGAGGUu -3' miRNA: 3'- cUGGCGua-----GUGCU-GGCG-GCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 2124 | 0.69 | 0.579973 |
Target: 5'- cGGCCGCccucCACGACCaccuggccgcgGCCGGAuGGGUg -3' miRNA: 3'- -CUGGCGua--GUGCUGG-----------CGGCUUcUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 47482 | 0.69 | 0.559052 |
Target: 5'- gGACCGCGUCGCcguGGCgCGuuGgcG-GGCg -3' miRNA: 3'- -CUGGCGUAGUG---CUG-GCggCuuCuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 40562 | 0.69 | 0.54867 |
Target: 5'- cGGCCGCggcguucaauGUCAuCGGCCGCCucAAG-GGCg -3' miRNA: 3'- -CUGGCG----------UAGU-GCUGGCGGc-UUCuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 44259 | 0.69 | 0.54867 |
Target: 5'- cGCCGUAgcacucguauUCGCGGCCGgUGAGGgccAGGCc -3' miRNA: 3'- cUGGCGU----------AGUGCUGGCgGCUUC---UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 25335 | 0.69 | 0.569489 |
Target: 5'- cGCCGCGggcgcCAUGGCCGCCguuguuGAAGAaGCg -3' miRNA: 3'- cUGGCGUa----GUGCUGGCGG------CUUCUcCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 26545 | 0.69 | 0.528094 |
Target: 5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3' miRNA: 3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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