Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18494 | 3' | -56.8 | NC_004681.1 | + | 14466 | 0.7 | 0.487867 |
Target: 5'- cGCCGCG-CGCGccgccuCCGCCGAgcAGGGcGCg -3' miRNA: 3'- cUGGCGUaGUGCu-----GGCGGCU--UCUC-CG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 50831 | 0.7 | 0.487867 |
Target: 5'- cACCGC--CACccaGCuCGCCGAAGAGGUg -3' miRNA: 3'- cUGGCGuaGUGc--UG-GCGGCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 16317 | 0.7 | 0.497795 |
Target: 5'- cGGCCGgAUCgACGGaaGCCGAGcAGGCc -3' miRNA: 3'- -CUGGCgUAG-UGCUggCGGCUUcUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 629 | 0.7 | 0.507812 |
Target: 5'- -cCCGuCGuugagggacUCGCGGCCGCgGAAGAuGGCc -3' miRNA: 3'- cuGGC-GU---------AGUGCUGGCGgCUUCU-CCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 17809 | 0.7 | 0.487867 |
Target: 5'- uGACCGCGgccguCGACUGgCGAAccgucGAGGCg -3' miRNA: 3'- -CUGGCGUagu--GCUGGCgGCUU-----CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 18485 | 0.7 | 0.507812 |
Target: 5'- uGCCGC--CGCGGCCGCCGccu-GGCc -3' miRNA: 3'- cUGGCGuaGUGCUGGCGGCuucuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 62197 | 0.7 | 0.497795 |
Target: 5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3' miRNA: 3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 22481 | 0.7 | 0.497795 |
Target: 5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3' miRNA: 3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 62685 | 0.7 | 0.497795 |
Target: 5'- uGACgaUGCGUCGuCGG-CGCCGGAuGAGGCg -3' miRNA: 3'- -CUG--GCGUAGU-GCUgGCGGCUU-CUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 16063 | 0.7 | 0.497795 |
Target: 5'- cGCCGCAaCGCaGACUGCCGcccucGGuGGCg -3' miRNA: 3'- cUGGCGUaGUG-CUGGCGGCu----UCuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 12497 | 0.7 | 0.507812 |
Target: 5'- uGACCGCGgaaggcagCAacggcgaGACCGCCGAGucgcAGGCu -3' miRNA: 3'- -CUGGCGUa-------GUg------CUGGCGGCUUc---UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 44786 | 0.7 | 0.517914 |
Target: 5'- gGACC---UCugGACCGCCcuGGAGGUg -3' miRNA: 3'- -CUGGcguAGugCUGGCGGcuUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 61603 | 0.7 | 0.497795 |
Target: 5'- uGACUGCAcccacuccCAUGAgccCCGCCcugGAAGAGGCg -3' miRNA: 3'- -CUGGCGUa-------GUGCU---GGCGG---CUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 62753 | 0.69 | 0.538348 |
Target: 5'- -uCCGCAaUCAggucgacaggcUGACCGCCGAGuuGGCu -3' miRNA: 3'- cuGGCGU-AGU-----------GCUGGCGGCUUcuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 34730 | 0.69 | 0.555932 |
Target: 5'- -cCCGCGcgCuuCGGCCGCCGccccuugucgaaguAGGGGGCa -3' miRNA: 3'- cuGGCGUa-Gu-GCUGGCGGC--------------UUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 44259 | 0.69 | 0.54867 |
Target: 5'- cGCCGUAgcacucguauUCGCGGCCGgUGAGGgccAGGCc -3' miRNA: 3'- cUGGCGU----------AGUGCUGGCgGCUUC---UCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 26545 | 0.69 | 0.528094 |
Target: 5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3' miRNA: 3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 9083 | 0.69 | 0.528094 |
Target: 5'- uGGCCGagGUgGCG-CCgacagcgaggagGCCGAGGAGGCg -3' miRNA: 3'- -CUGGCg-UAgUGCuGG------------CGGCUUCUCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 6392 | 0.69 | 0.525032 |
Target: 5'- cGACCGCGgcaggcccaugaucUCGCGGCCcucguUCGggGuGGCg -3' miRNA: 3'- -CUGGCGU--------------AGUGCUGGc----GGCuuCuCCG- -5' |
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18494 | 3' | -56.8 | NC_004681.1 | + | 25201 | 0.69 | 0.528094 |
Target: 5'- gGGgUGgGUcCGCGGCCaaccgagguGCCGAGGAGGCu -3' miRNA: 3'- -CUgGCgUA-GUGCUGG---------CGGCUUCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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