miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 54259 1.12 0.0007
Target:  5'- aGACCGCAUCACGACCGCCGAAGAGGCg -3'
miRNA:   3'- -CUGGCGUAGUGCUGGCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 57791 0.81 0.108865
Target:  5'- aGACCGCGacCACGcgccgcGCCGCCGAGGuGGCg -3'
miRNA:   3'- -CUGGCGUa-GUGC------UGGCGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 16079 0.79 0.135118
Target:  5'- aGGCCaGCAUCugGACCGC-GggGAuGGCa -3'
miRNA:   3'- -CUGG-CGUAGugCUGGCGgCuuCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 33373 0.76 0.227718
Target:  5'- cGGCCGCGUCGCG-CgCGCCGu-GuGGCa -3'
miRNA:   3'- -CUGGCGUAGUGCuG-GCGGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 44781 0.75 0.258053
Target:  5'- cGCCGcCGUCGCcguuGCCGUCGAGGAGGg -3'
miRNA:   3'- cUGGC-GUAGUGc---UGGCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 16644 0.75 0.271084
Target:  5'- aGCUGCAUacCACGGCCGCCGu-GGGGa -3'
miRNA:   3'- cUGGCGUA--GUGCUGGCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 61670 0.74 0.284638
Target:  5'- cGCCGCcgCGgaGGCCGCCGccGAGGUc -3'
miRNA:   3'- cUGGCGuaGUg-CUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32000 0.74 0.298722
Target:  5'- -cCCGCgAUgGCGGCCGCCGc-GAGGUa -3'
miRNA:   3'- cuGGCG-UAgUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 42234 0.73 0.352225
Target:  5'- -uCCGCA-CACGGCCGCCGAGcugcuGGUc -3'
miRNA:   3'- cuGGCGUaGUGCUGGCGGCUUcu---CCG- -5'
18494 3' -56.8 NC_004681.1 + 18142 0.72 0.377147
Target:  5'- aGACCGCG--GCG-CUGCCGu-GAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 37766 0.72 0.385714
Target:  5'- ---aGCGacgCGCGGCCGCUGgcGAGGCc -3'
miRNA:   3'- cuggCGUa--GUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 7553 0.72 0.412173
Target:  5'- gGACUGuCGUCuacacgguggAgGACgGCCGggGAGGCc -3'
miRNA:   3'- -CUGGC-GUAG----------UgCUGgCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 24941 0.71 0.439726
Target:  5'- cGGCCGCcgCcCGcGCCGCCGAcgccgauGAGGUc -3'
miRNA:   3'- -CUGGCGuaGuGC-UGGCGGCUu------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 1028 0.71 0.439726
Target:  5'- uGACCGCugacaaauacGUCGCGGaCGCCG-AGAGGa -3'
miRNA:   3'- -CUGGCG----------UAGUGCUgGCGGCuUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 22057 0.71 0.458666
Target:  5'- ---aGCAUCGCaaaggacgccGGCCGCCGAcgaAGAGGUc -3'
miRNA:   3'- cuggCGUAGUG----------CUGGCGGCU---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 7892 0.71 0.458666
Target:  5'- aGACCGCcgC-CGccuccgaggaaGCCGCCGAGGAGcCg -3'
miRNA:   3'- -CUGGCGuaGuGC-----------UGGCGGCUUCUCcG- -5'
18494 3' -56.8 NC_004681.1 + 68436 0.71 0.458666
Target:  5'- gGACgGCAcUCuacugaGGCUGCCGAAGaAGGCu -3'
miRNA:   3'- -CUGgCGU-AGug----CUGGCGGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 50831 0.7 0.487867
Target:  5'- cACCGC--CACccaGCuCGCCGAAGAGGUg -3'
miRNA:   3'- cUGGCGuaGUGc--UG-GCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 14466 0.7 0.487867
Target:  5'- cGCCGCG-CGCGccgccuCCGCCGAgcAGGGcGCg -3'
miRNA:   3'- cUGGCGUaGUGCu-----GGCGGCU--UCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.