miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 17809 0.7 0.487867
Target:  5'- uGACCGCGgccguCGACUGgCGAAccgucGAGGCg -3'
miRNA:   3'- -CUGGCGUagu--GCUGGCgGCUU-----CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22481 0.7 0.497795
Target:  5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3'
miRNA:   3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61603 0.7 0.497795
Target:  5'- uGACUGCAcccacuccCAUGAgccCCGCCcugGAAGAGGCg -3'
miRNA:   3'- -CUGGCGUa-------GUGCU---GGCGG---CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62685 0.7 0.497795
Target:  5'- uGACgaUGCGUCGuCGG-CGCCGGAuGAGGCg -3'
miRNA:   3'- -CUG--GCGUAGU-GCUgGCGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62197 0.7 0.497795
Target:  5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3'
miRNA:   3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16063 0.7 0.497795
Target:  5'- cGCCGCAaCGCaGACUGCCGcccucGGuGGCg -3'
miRNA:   3'- cUGGCGUaGUG-CUGGCGGCu----UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 16317 0.7 0.497795
Target:  5'- cGGCCGgAUCgACGGaaGCCGAGcAGGCc -3'
miRNA:   3'- -CUGGCgUAG-UGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 629 0.7 0.507812
Target:  5'- -cCCGuCGuugagggacUCGCGGCCGCgGAAGAuGGCc -3'
miRNA:   3'- cuGGC-GU---------AGUGCUGGCGgCUUCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 12497 0.7 0.507812
Target:  5'- uGACCGCGgaaggcagCAacggcgaGACCGCCGAGucgcAGGCu -3'
miRNA:   3'- -CUGGCGUa-------GUg------CUGGCGGCUUc---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 18485 0.7 0.507812
Target:  5'- uGCCGC--CGCGGCCGCCGccu-GGCc -3'
miRNA:   3'- cUGGCGuaGUGCUGGCGGCuucuCCG- -5'
18494 3' -56.8 NC_004681.1 + 62104 0.7 0.517914
Target:  5'- cGGCCGCGUCGaguaGGCCGCgaucugguCGAAcAGGUg -3'
miRNA:   3'- -CUGGCGUAGUg---CUGGCG--------GCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44786 0.7 0.517914
Target:  5'- gGACC---UCugGACCGCCcuGGAGGUg -3'
miRNA:   3'- -CUGGcguAGugCUGGCGGcuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 33391 0.7 0.517914
Target:  5'- cACCGCggCGCGACCGgCGucGAugacacccGGCa -3'
miRNA:   3'- cUGGCGuaGUGCUGGCgGCuuCU--------CCG- -5'
18494 3' -56.8 NC_004681.1 + 6392 0.69 0.525032
Target:  5'- cGACCGCGgcaggcccaugaucUCGCGGCCcucguUCGggGuGGCg -3'
miRNA:   3'- -CUGGCGU--------------AGUGCUGGc----GGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 26545 0.69 0.528094
Target:  5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3'
miRNA:   3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 25201 0.69 0.528094
Target:  5'- gGGgUGgGUcCGCGGCCaaccgagguGCCGAGGAGGCu -3'
miRNA:   3'- -CUgGCgUA-GUGCUGG---------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 9083 0.69 0.528094
Target:  5'- uGGCCGagGUgGCG-CCgacagcgaggagGCCGAGGAGGCg -3'
miRNA:   3'- -CUGGCg-UAgUGCuGG------------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62753 0.69 0.538348
Target:  5'- -uCCGCAaUCAggucgacaggcUGACCGCCGAGuuGGCu -3'
miRNA:   3'- cuGGCGU-AGU-----------GCUGGCGGCUUcuCCG- -5'
18494 3' -56.8 NC_004681.1 + 34705 0.69 0.54867
Target:  5'- gGGCCGCAUCcccauCGAg-GUgGAGGAGGCg -3'
miRNA:   3'- -CUGGCGUAGu----GCUggCGgCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44259 0.69 0.54867
Target:  5'- cGCCGUAgcacucguauUCGCGGCCGgUGAGGgccAGGCc -3'
miRNA:   3'- cUGGCGU----------AGUGCUGGCgGCUUC---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.