miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 4819 0.66 0.716887
Target:  5'- cGACCGCGaCAUGGCUGCC-AAGc-GCa -3'
miRNA:   3'- -CUGGCGUaGUGCUGGCGGcUUCucCG- -5'
18494 3' -56.8 NC_004681.1 + 16714 0.66 0.716887
Target:  5'- cGCCGCcuccAUCGCGGCCugcaguugcagGUCGAccggggacgccGGGGGCu -3'
miRNA:   3'- cUGGCG----UAGUGCUGG-----------CGGCU-----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 30349 0.66 0.716887
Target:  5'- cGCCGUA-C-CGGCCGCCGccgcuGuGGCg -3'
miRNA:   3'- cUGGCGUaGuGCUGGCGGCuu---CuCCG- -5'
18494 3' -56.8 NC_004681.1 + 48805 0.66 0.716887
Target:  5'- uGACCGCGg-GCGACUcgaaGCCGAAcucGGCc -3'
miRNA:   3'- -CUGGCGUagUGCUGG----CGGCUUcu-CCG- -5'
18494 3' -56.8 NC_004681.1 + 7345 0.66 0.716887
Target:  5'- cGGCCGCGUCgugGAUgGCCuGGAGAaGCg -3'
miRNA:   3'- -CUGGCGUAGug-CUGgCGG-CUUCUcCG- -5'
18494 3' -56.8 NC_004681.1 + 35368 0.66 0.713793
Target:  5'- cAUCGC-UCACGAggcCCGCUGGGugucgggauggagcGAGGCg -3'
miRNA:   3'- cUGGCGuAGUGCU---GGCGGCUU--------------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 67925 0.66 0.706549
Target:  5'- cGCCGCGgagaugacgCACGA-CGCUGucauAGGGGCc -3'
miRNA:   3'- cUGGCGUa--------GUGCUgGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 63051 0.66 0.706549
Target:  5'- cGCCGCcgcCACcACCGCCGAAGGagauGGa -3'
miRNA:   3'- cUGGCGua-GUGcUGGCGGCUUCU----CCg -5'
18494 3' -56.8 NC_004681.1 + 40152 0.66 0.706549
Target:  5'- aGGCCGCG--ACG-CCGCaGAucGAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGgCUu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 51515 0.66 0.706549
Target:  5'- cACCGaCGcCACcACCuCCGAAGAGGUc -3'
miRNA:   3'- cUGGC-GUaGUGcUGGcGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 296 0.66 0.706549
Target:  5'- aACUGuCAUCAcCGAcCCGCgGAAGcacGGGCu -3'
miRNA:   3'- cUGGC-GUAGU-GCU-GGCGgCUUC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 48874 0.66 0.706549
Target:  5'- cGACgGCcUCACuccagguguaGCCGCCGuccuGGAGGUg -3'
miRNA:   3'- -CUGgCGuAGUGc---------UGGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 5960 0.66 0.705511
Target:  5'- uGACCGCGguggagaugcaguUCAuCGAacCCGCCagcucaaccgcGAAGAGGUc -3'
miRNA:   3'- -CUGGCGU-------------AGU-GCU--GGCGG-----------CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 10765 0.67 0.696142
Target:  5'- uGCaCGCG--ACGGCCGCgGGcaccGGGGGCg -3'
miRNA:   3'- cUG-GCGUagUGCUGGCGgCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62128 0.67 0.696142
Target:  5'- cGAgCGCAUCAuCGGCC-CCGA---GGCg -3'
miRNA:   3'- -CUgGCGUAGU-GCUGGcGGCUucuCCG- -5'
18494 3' -56.8 NC_004681.1 + 39038 0.67 0.696142
Target:  5'- aGCCGCAgaugCACGGUgGCCGGuugcAGGCu -3'
miRNA:   3'- cUGGCGUa---GUGCUGgCGGCUuc--UCCG- -5'
18494 3' -56.8 NC_004681.1 + 39552 0.67 0.696142
Target:  5'- cGACCGCuacAUCAagaGcGCgGCCGAGGAGcucGCa -3'
miRNA:   3'- -CUGGCG---UAGUg--C-UGgCGGCUUCUC---CG- -5'
18494 3' -56.8 NC_004681.1 + 57337 0.67 0.685679
Target:  5'- cGCCGCAagcUCGCGuACCG-CGggGAgccccaagGGCu -3'
miRNA:   3'- cUGGCGU---AGUGC-UGGCgGCuuCU--------CCG- -5'
18494 3' -56.8 NC_004681.1 + 46778 0.67 0.685679
Target:  5'- cACgGCGUCACGgucaucccGCgCGCCGucGAGGa -3'
miRNA:   3'- cUGgCGUAGUGC--------UG-GCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 58772 0.67 0.685679
Target:  5'- cGAUgGUGUCACGcgcACCGUCGAGGcGcGCg -3'
miRNA:   3'- -CUGgCGUAGUGC---UGGCGGCUUCuC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.