miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 58772 0.67 0.685679
Target:  5'- cGAUgGUGUCACGcgcACCGUCGAGGcGcGCg -3'
miRNA:   3'- -CUGgCGUAGUGC---UGGCGGCUUCuC-CG- -5'
18494 3' -56.8 NC_004681.1 + 7221 0.67 0.664619
Target:  5'- cACCGCAUCcCGGuuGgaGggGAuGGCg -3'
miRNA:   3'- cUGGCGUAGuGCUggCggCuuCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 41164 0.67 0.654042
Target:  5'- uGAgCaCAUCgGCGGCggCGCCGAAGAGGg -3'
miRNA:   3'- -CUgGcGUAG-UGCUG--GCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 32863 0.67 0.654042
Target:  5'- cGGCCcaGCGgauugC-CGACCggGCCGAAcGAGGCg -3'
miRNA:   3'- -CUGG--CGUa----GuGCUGG--CGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 24143 0.67 0.643446
Target:  5'- aGAUCGCGUCggACG-CCGCC-AAG-GGCc -3'
miRNA:   3'- -CUGGCGUAG--UGCuGGCGGcUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 30787 0.68 0.637083
Target:  5'- cGGCCGCGcCAUGACUGUCGAcaacuccuacgccacGGccuGGGCc -3'
miRNA:   3'- -CUGGCGUaGUGCUGGCGGCU---------------UC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 40242 0.68 0.63284
Target:  5'- uGCgGCGUCGCGGCCuGCCugucccGGGCg -3'
miRNA:   3'- cUGgCGUAGUGCUGG-CGGcuuc--UCCG- -5'
18494 3' -56.8 NC_004681.1 + 65704 0.68 0.622234
Target:  5'- aGGCCGC-UCAUGACCuCCucagcGAGGCc -3'
miRNA:   3'- -CUGGCGuAGUGCUGGcGGcuu--CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 9088 0.68 0.621174
Target:  5'- uGGCCGCGUCgucaccgGCG-CCGCUGGcucGGGCu -3'
miRNA:   3'- -CUGGCGUAG-------UGCuGGCGGCUuc-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 17807 0.68 0.611636
Target:  5'- aGGCCGaCAUCaacGCGGCgGCCGcgcaAGGCa -3'
miRNA:   3'- -CUGGC-GUAG---UGCUGgCGGCuuc-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 44585 0.68 0.601054
Target:  5'- cGCCGCGcUCGCGGCCGCCGc------ -3'
miRNA:   3'- cUGGCGU-AGUGCUGGCGGCuucuccg -5'
18494 3' -56.8 NC_004681.1 + 51189 0.68 0.594717
Target:  5'- aGGCCGuCGUCuugggcGCucuggacuucucucaGGCCGUCGAGGAGGUc -3'
miRNA:   3'- -CUGGC-GUAG------UG---------------CUGGCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61858 0.68 0.590498
Target:  5'- uGGCCG-AUgGCGGCCGCgGucuGGuGGCg -3'
miRNA:   3'- -CUGGCgUAgUGCUGGCGgCu--UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 52698 0.68 0.590498
Target:  5'- uACCGCcuggcugCAUGAgCUGCuCGAAGAGGUu -3'
miRNA:   3'- cUGGCGua-----GUGCU-GGCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 2124 0.69 0.579973
Target:  5'- cGGCCGCccucCACGACCaccuggccgcgGCCGGAuGGGUg -3'
miRNA:   3'- -CUGGCGua--GUGCUGG-----------CGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 25335 0.69 0.569489
Target:  5'- cGCCGCGggcgcCAUGGCCGCCguuguuGAAGAaGCg -3'
miRNA:   3'- cUGGCGUa----GUGCUGGCGG------CUUCUcCG- -5'
18494 3' -56.8 NC_004681.1 + 47482 0.69 0.559052
Target:  5'- gGACCGCGUCGCcguGGCgCGuuGgcG-GGCg -3'
miRNA:   3'- -CUGGCGUAGUG---CUG-GCggCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 34730 0.69 0.555932
Target:  5'- -cCCGCGcgCuuCGGCCGCCGccccuugucgaaguAGGGGGCa -3'
miRNA:   3'- cuGGCGUa-Gu-GCUGGCGGC--------------UUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 34705 0.69 0.54867
Target:  5'- gGGCCGCAUCcccauCGAg-GUgGAGGAGGCg -3'
miRNA:   3'- -CUGGCGUAGu----GCUggCGgCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 40562 0.69 0.54867
Target:  5'- cGGCCGCggcguucaauGUCAuCGGCCGCCucAAG-GGCg -3'
miRNA:   3'- -CUGGCG----------UAGU-GCUGGCGGc-UUCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.