miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 296 0.66 0.706549
Target:  5'- aACUGuCAUCAcCGAcCCGCgGAAGcacGGGCu -3'
miRNA:   3'- cUGGC-GUAGU-GCU-GGCGgCUUC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 629 0.7 0.507812
Target:  5'- -cCCGuCGuugagggacUCGCGGCCGCgGAAGAuGGCc -3'
miRNA:   3'- cuGGC-GU---------AGUGCUGGCGgCUUCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 1028 0.71 0.439726
Target:  5'- uGACCGCugacaaauacGUCGCGGaCGCCG-AGAGGa -3'
miRNA:   3'- -CUGGCG----------UAGUGCUgGCGGCuUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 2124 0.69 0.579973
Target:  5'- cGGCCGCccucCACGACCaccuggccgcgGCCGGAuGGGUg -3'
miRNA:   3'- -CUGGCGua--GUGCUGG-----------CGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 4819 0.66 0.716887
Target:  5'- cGACCGCGaCAUGGCUGCC-AAGc-GCa -3'
miRNA:   3'- -CUGGCGUaGUGCUGGCGGcUUCucCG- -5'
18494 3' -56.8 NC_004681.1 + 5960 0.66 0.705511
Target:  5'- uGACCGCGguggagaugcaguUCAuCGAacCCGCCagcucaaccgcGAAGAGGUc -3'
miRNA:   3'- -CUGGCGU-------------AGU-GCU--GGCGG-----------CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 6392 0.69 0.525032
Target:  5'- cGACCGCGgcaggcccaugaucUCGCGGCCcucguUCGggGuGGCg -3'
miRNA:   3'- -CUGGCGU--------------AGUGCUGGc----GGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 7221 0.67 0.664619
Target:  5'- cACCGCAUCcCGGuuGgaGggGAuGGCg -3'
miRNA:   3'- cUGGCGUAGuGCUggCggCuuCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 7345 0.66 0.716887
Target:  5'- cGGCCGCGUCgugGAUgGCCuGGAGAaGCg -3'
miRNA:   3'- -CUGGCGUAGug-CUGgCGG-CUUCUcCG- -5'
18494 3' -56.8 NC_004681.1 + 7553 0.72 0.412173
Target:  5'- gGACUGuCGUCuacacgguggAgGACgGCCGggGAGGCc -3'
miRNA:   3'- -CUGGC-GUAG----------UgCUGgCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 7892 0.71 0.458666
Target:  5'- aGACCGCcgC-CGccuccgaggaaGCCGCCGAGGAGcCg -3'
miRNA:   3'- -CUGGCGuaGuGC-----------UGGCGGCUUCUCcG- -5'
18494 3' -56.8 NC_004681.1 + 9083 0.69 0.528094
Target:  5'- uGGCCGagGUgGCG-CCgacagcgaggagGCCGAGGAGGCg -3'
miRNA:   3'- -CUGGCg-UAgUGCuGG------------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 9088 0.68 0.621174
Target:  5'- uGGCCGCGUCgucaccgGCG-CCGCUGGcucGGGCu -3'
miRNA:   3'- -CUGGCGUAG-------UGCuGGCGGCUuc-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 9487 0.66 0.716887
Target:  5'- uGAUgGCAaggUCACcguGCgCGCCGAAGAGcGCc -3'
miRNA:   3'- -CUGgCGU---AGUGc--UG-GCGGCUUCUC-CG- -5'
18494 3' -56.8 NC_004681.1 + 10765 0.67 0.696142
Target:  5'- uGCaCGCG--ACGGCCGCgGGcaccGGGGGCg -3'
miRNA:   3'- cUG-GCGUagUGCUGGCGgCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 10960 0.67 0.685679
Target:  5'- aGGCCaGCGUgA--ACCGCgGGAGAGGUc -3'
miRNA:   3'- -CUGG-CGUAgUgcUGGCGgCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 12056 0.66 0.747394
Target:  5'- -uCgGCGUUgACGGCCGCaUGGAcGAGGCc -3'
miRNA:   3'- cuGgCGUAG-UGCUGGCG-GCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 12497 0.7 0.507812
Target:  5'- uGACCGCGgaaggcagCAacggcgaGACCGCCGAGucgcAGGCu -3'
miRNA:   3'- -CUGGCGUa-------GUg------CUGGCGGCUUc---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 12673 0.66 0.73732
Target:  5'- -cCCcCAUCACcGCCGCgGAgcucaaccguauGGAGGCu -3'
miRNA:   3'- cuGGcGUAGUGcUGGCGgCU------------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 14368 0.66 0.75736
Target:  5'- -uCCGCccgCAUGAUCGCCGcGGAGaaccGCa -3'
miRNA:   3'- cuGGCGua-GUGCUGGCGGCuUCUC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.