miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 14466 0.7 0.487867
Target:  5'- cGCCGCG-CGCGccgccuCCGCCGAgcAGGGcGCg -3'
miRNA:   3'- cUGGCGUaGUGCu-----GGCGGCU--UCUC-CG- -5'
18494 3' -56.8 NC_004681.1 + 16063 0.7 0.497795
Target:  5'- cGCCGCAaCGCaGACUGCCGcccucGGuGGCg -3'
miRNA:   3'- cUGGCGUaGUG-CUGGCGGCu----UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 16079 0.79 0.135118
Target:  5'- aGGCCaGCAUCugGACCGC-GggGAuGGCa -3'
miRNA:   3'- -CUGG-CGUAGugCUGGCGgCuuCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 16317 0.7 0.497795
Target:  5'- cGGCCGgAUCgACGGaaGCCGAGcAGGCc -3'
miRNA:   3'- -CUGGCgUAG-UGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16583 0.66 0.75736
Target:  5'- uGCCGgGgCGCGG-CGCCGAguaguccgugGGGGGCu -3'
miRNA:   3'- cUGGCgUaGUGCUgGCGGCU----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16644 0.75 0.271084
Target:  5'- aGCUGCAUacCACGGCCGCCGu-GGGGa -3'
miRNA:   3'- cUGGCGUA--GUGCUGGCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 16714 0.66 0.716887
Target:  5'- cGCCGCcuccAUCGCGGCCugcaguugcagGUCGAccggggacgccGGGGGCu -3'
miRNA:   3'- cUGGCG----UAGUGCUGG-----------CGGCU-----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 17668 0.66 0.727148
Target:  5'- uGGCCGCggcGUCACuGCCccaGuuGAAGGGGg -3'
miRNA:   3'- -CUGGCG---UAGUGcUGG---CggCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 17807 0.68 0.611636
Target:  5'- aGGCCGaCAUCaacGCGGCgGCCGcgcaAGGCa -3'
miRNA:   3'- -CUGGC-GUAG---UGCUGgCGGCuuc-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 17809 0.7 0.487867
Target:  5'- uGACCGCGgccguCGACUGgCGAAccgucGAGGCg -3'
miRNA:   3'- -CUGGCGUagu--GCUGGCgGCUU-----CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 18142 0.72 0.377147
Target:  5'- aGACCGCG--GCG-CUGCCGu-GAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 18485 0.7 0.507812
Target:  5'- uGCCGC--CGCGGCCGCCGccu-GGCc -3'
miRNA:   3'- cUGGCGuaGUGCUGGCGGCuucuCCG- -5'
18494 3' -56.8 NC_004681.1 + 19041 0.66 0.751394
Target:  5'- cGACUcCAUCuAUGAauCCGCCGAGcucgacuucacugucGAGGCa -3'
miRNA:   3'- -CUGGcGUAG-UGCU--GGCGGCUU---------------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22057 0.71 0.458666
Target:  5'- ---aGCAUCGCaaaggacgccGGCCGCCGAcgaAGAGGUc -3'
miRNA:   3'- cuggCGUAGUG----------CUGGCGGCU---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22481 0.7 0.497795
Target:  5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3'
miRNA:   3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 24143 0.67 0.643446
Target:  5'- aGAUCGCGUCggACG-CCGCC-AAG-GGCc -3'
miRNA:   3'- -CUGGCGUAG--UGCuGGCGGcUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 24941 0.71 0.439726
Target:  5'- cGGCCGCcgCcCGcGCCGCCGAcgccgauGAGGUc -3'
miRNA:   3'- -CUGGCGuaGuGC-UGGCGGCUu------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 25201 0.69 0.528094
Target:  5'- gGGgUGgGUcCGCGGCCaaccgagguGCCGAGGAGGCu -3'
miRNA:   3'- -CUgGCgUA-GUGCUGG---------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 25335 0.69 0.569489
Target:  5'- cGCCGCGggcgcCAUGGCCGCCguuguuGAAGAaGCg -3'
miRNA:   3'- cUGGCGUa----GUGCUGGCGG------CUUCUcCG- -5'
18494 3' -56.8 NC_004681.1 + 26545 0.69 0.528094
Target:  5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3'
miRNA:   3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.