miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 30349 0.66 0.716887
Target:  5'- cGCCGUA-C-CGGCCGCCGccgcuGuGGCg -3'
miRNA:   3'- cUGGCGUaGuGCUGGCGGCuu---CuCCG- -5'
18494 3' -56.8 NC_004681.1 + 30787 0.68 0.637083
Target:  5'- cGGCCGCGcCAUGACUGUCGAcaacuccuacgccacGGccuGGGCc -3'
miRNA:   3'- -CUGGCGUaGUGCUGGCGGCU---------------UC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 32000 0.74 0.298722
Target:  5'- -cCCGCgAUgGCGGCCGCCGc-GAGGUa -3'
miRNA:   3'- cuGGCG-UAgUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32863 0.67 0.654042
Target:  5'- cGGCCcaGCGgauugC-CGACCggGCCGAAcGAGGCg -3'
miRNA:   3'- -CUGG--CGUa----GuGCUGG--CGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 33373 0.76 0.227718
Target:  5'- cGGCCGCGUCGCG-CgCGCCGu-GuGGCa -3'
miRNA:   3'- -CUGGCGUAGUGCuG-GCGGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 33391 0.7 0.517914
Target:  5'- cACCGCggCGCGACCGgCGucGAugacacccGGCa -3'
miRNA:   3'- cUGGCGuaGUGCUGGCgGCuuCU--------CCG- -5'
18494 3' -56.8 NC_004681.1 + 34705 0.69 0.54867
Target:  5'- gGGCCGCAUCcccauCGAg-GUgGAGGAGGCg -3'
miRNA:   3'- -CUGGCGUAGu----GCUggCGgCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 34730 0.69 0.555932
Target:  5'- -cCCGCGcgCuuCGGCCGCCGccccuugucgaaguAGGGGGCa -3'
miRNA:   3'- cuGGCGUa-Gu-GCUGGCGGC--------------UUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 35368 0.66 0.713793
Target:  5'- cAUCGC-UCACGAggcCCGCUGGGugucgggauggagcGAGGCg -3'
miRNA:   3'- cUGGCGuAGUGCU---GGCGGCUU--------------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 37766 0.72 0.385714
Target:  5'- ---aGCGacgCGCGGCCGCUGgcGAGGCc -3'
miRNA:   3'- cuggCGUa--GUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 38963 0.66 0.73732
Target:  5'- uGACCGCGgugaagcaguUCAugcgcugggUGGCCGaCGAGGaAGGCg -3'
miRNA:   3'- -CUGGCGU----------AGU---------GCUGGCgGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 39038 0.67 0.696142
Target:  5'- aGCCGCAgaugCACGGUgGCCGGuugcAGGCu -3'
miRNA:   3'- cUGGCGUa---GUGCUGgCGGCUuc--UCCG- -5'
18494 3' -56.8 NC_004681.1 + 39328 0.66 0.727148
Target:  5'- cGCCGCGcuggaCACGGCU-CCGAGG-GGCc -3'
miRNA:   3'- cUGGCGUa----GUGCUGGcGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 39552 0.67 0.696142
Target:  5'- cGACCGCuacAUCAagaGcGCgGCCGAGGAGcucGCa -3'
miRNA:   3'- -CUGGCG---UAGUg--C-UGgCGGCUUCUC---CG- -5'
18494 3' -56.8 NC_004681.1 + 39785 0.66 0.75736
Target:  5'- -cCCGCcgCGCGACCaucgccucccacGCCucguGGGGCa -3'
miRNA:   3'- cuGGCGuaGUGCUGG------------CGGcuu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 40152 0.66 0.706549
Target:  5'- aGGCCGCG--ACG-CCGCaGAucGAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGgCUu-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 40242 0.68 0.63284
Target:  5'- uGCgGCGUCGCGGCCuGCCugucccGGGCg -3'
miRNA:   3'- cUGgCGUAGUGCUGG-CGGcuuc--UCCG- -5'
18494 3' -56.8 NC_004681.1 + 40562 0.69 0.54867
Target:  5'- cGGCCGCggcguucaauGUCAuCGGCCGCCucAAG-GGCg -3'
miRNA:   3'- -CUGGCG----------UAGU-GCUGGCGGc-UUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 41164 0.67 0.654042
Target:  5'- uGAgCaCAUCgGCGGCggCGCCGAAGAGGg -3'
miRNA:   3'- -CUgGcGUAG-UGCUG--GCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.