miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 72804 0.66 0.75736
Target:  5'- uACCGUGUCACuACCGCgCGcGGAGa- -3'
miRNA:   3'- cUGGCGUAGUGcUGGCG-GCuUCUCcg -5'
18494 3' -56.8 NC_004681.1 + 70943 0.66 0.73732
Target:  5'- aGGCaUGC-UCGCGGCCGCUGAgcguGGAGa- -3'
miRNA:   3'- -CUG-GCGuAGUGCUGGCGGCU----UCUCcg -5'
18494 3' -56.8 NC_004681.1 + 68911 0.66 0.73732
Target:  5'- uGACCauCGUCACGGCCGCCgccaccGAAGAc-- -3'
miRNA:   3'- -CUGGc-GUAGUGCUGGCGG------CUUCUccg -5'
18494 3' -56.8 NC_004681.1 + 68436 0.71 0.458666
Target:  5'- gGACgGCAcUCuacugaGGCUGCCGAAGaAGGCu -3'
miRNA:   3'- -CUGgCGU-AGug----CUGGCGGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 68133 0.66 0.727148
Target:  5'- gGACCG-AUCAUGAaccagcucUUGCCG-GGAGGCc -3'
miRNA:   3'- -CUGGCgUAGUGCU--------GGCGGCuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 67925 0.66 0.706549
Target:  5'- cGCCGCGgagaugacgCACGA-CGCUGucauAGGGGCc -3'
miRNA:   3'- cUGGCGUa--------GUGCUgGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 65961 0.66 0.75736
Target:  5'- -uCCGCuacggCACGAagGCCGAGaAGGCu -3'
miRNA:   3'- cuGGCGua---GUGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 65832 0.66 0.747394
Target:  5'- cACCGUuccagGUgACGACgaugucggccuCGCUGAGGAGGUc -3'
miRNA:   3'- cUGGCG-----UAgUGCUG-----------GCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 65704 0.68 0.622234
Target:  5'- aGGCCGC-UCAUGACCuCCucagcGAGGCc -3'
miRNA:   3'- -CUGGCGuAGUGCUGGcGGcuu--CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 63051 0.66 0.706549
Target:  5'- cGCCGCcgcCACcACCGCCGAAGGagauGGa -3'
miRNA:   3'- cUGGCGua-GUGcUGGCGGCUUCU----CCg -5'
18494 3' -56.8 NC_004681.1 + 62753 0.69 0.538348
Target:  5'- -uCCGCAaUCAggucgacaggcUGACCGCCGAGuuGGCu -3'
miRNA:   3'- cuGGCGU-AGU-----------GCUGGCGGCUUcuCCG- -5'
18494 3' -56.8 NC_004681.1 + 62685 0.7 0.497795
Target:  5'- uGACgaUGCGUCGuCGG-CGCCGGAuGAGGCg -3'
miRNA:   3'- -CUG--GCGUAGU-GCUgGCGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62197 0.7 0.497795
Target:  5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3'
miRNA:   3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62128 0.67 0.696142
Target:  5'- cGAgCGCAUCAuCGGCC-CCGA---GGCg -3'
miRNA:   3'- -CUgGCGUAGU-GCUGGcGGCUucuCCG- -5'
18494 3' -56.8 NC_004681.1 + 62104 0.7 0.517914
Target:  5'- cGGCCGCGUCGaguaGGCCGCgaucugguCGAAcAGGUg -3'
miRNA:   3'- -CUGGCGUAGUg---CUGGCG--------GCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61858 0.68 0.590498
Target:  5'- uGGCCG-AUgGCGGCCGCgGucuGGuGGCg -3'
miRNA:   3'- -CUGGCgUAgUGCUGGCGgCu--UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 61670 0.74 0.284638
Target:  5'- cGCCGCcgCGgaGGCCGCCGccGAGGUc -3'
miRNA:   3'- cUGGCGuaGUg-CUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61603 0.7 0.497795
Target:  5'- uGACUGCAcccacuccCAUGAgccCCGCCcugGAAGAGGCg -3'
miRNA:   3'- -CUGGCGUa-------GUGCU---GGCGG---CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 61207 0.66 0.75736
Target:  5'- cGCUGCAccaucuggCGCGacGCCGCCGAGaacGuGGCg -3'
miRNA:   3'- cUGGCGUa-------GUGC--UGGCGGCUU---CuCCG- -5'
18494 3' -56.8 NC_004681.1 + 60380 0.66 0.727148
Target:  5'- cGCUGCAUCA-G-UCGCCGggGcagugaccAGGCg -3'
miRNA:   3'- cUGGCGUAGUgCuGGCGGCuuC--------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.