miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 58772 0.67 0.685679
Target:  5'- cGAUgGUGUCACGcgcACCGUCGAGGcGcGCg -3'
miRNA:   3'- -CUGgCGUAGUGC---UGGCGGCUUCuC-CG- -5'
18494 3' -56.8 NC_004681.1 + 57791 0.81 0.108865
Target:  5'- aGACCGCGacCACGcgccgcGCCGCCGAGGuGGCg -3'
miRNA:   3'- -CUGGCGUa-GUGC------UGGCGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 57337 0.67 0.685679
Target:  5'- cGCCGCAagcUCGCGuACCG-CGggGAgccccaagGGCu -3'
miRNA:   3'- cUGGCGU---AGUGC-UGGCgGCuuCU--------CCG- -5'
18494 3' -56.8 NC_004681.1 + 54259 1.12 0.0007
Target:  5'- aGACCGCAUCACGACCGCCGAAGAGGCg -3'
miRNA:   3'- -CUGGCGUAGUGCUGGCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 53434 0.66 0.75736
Target:  5'- aGAcCCGCAUCACGAacgguCUGaUCGAAGcccucGGCa -3'
miRNA:   3'- -CU-GGCGUAGUGCU-----GGC-GGCUUCu----CCG- -5'
18494 3' -56.8 NC_004681.1 + 52698 0.68 0.590498
Target:  5'- uACCGCcuggcugCAUGAgCUGCuCGAAGAGGUu -3'
miRNA:   3'- cUGGCGua-----GUGCU-GGCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 51515 0.66 0.706549
Target:  5'- cACCGaCGcCACcACCuCCGAAGAGGUc -3'
miRNA:   3'- cUGGC-GUaGUGcUGGcGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 51189 0.68 0.594717
Target:  5'- aGGCCGuCGUCuugggcGCucuggacuucucucaGGCCGUCGAGGAGGUc -3'
miRNA:   3'- -CUGGC-GUAG------UG---------------CUGGCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 50831 0.7 0.487867
Target:  5'- cACCGC--CACccaGCuCGCCGAAGAGGUg -3'
miRNA:   3'- cUGGCGuaGUGc--UG-GCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 48874 0.66 0.706549
Target:  5'- cGACgGCcUCACuccagguguaGCCGCCGuccuGGAGGUg -3'
miRNA:   3'- -CUGgCGuAGUGc---------UGGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 48805 0.66 0.716887
Target:  5'- uGACCGCGg-GCGACUcgaaGCCGAAcucGGCc -3'
miRNA:   3'- -CUGGCGUagUGCUGG----CGGCUUcu-CCG- -5'
18494 3' -56.8 NC_004681.1 + 47482 0.69 0.559052
Target:  5'- gGACCGCGUCGCcguGGCgCGuuGgcG-GGCg -3'
miRNA:   3'- -CUGGCGUAGUG---CUG-GCggCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 46778 0.67 0.685679
Target:  5'- cACgGCGUCACGgucaucccGCgCGCCGucGAGGa -3'
miRNA:   3'- cUGgCGUAGUGC--------UG-GCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 44786 0.7 0.517914
Target:  5'- gGACC---UCugGACCGCCcuGGAGGUg -3'
miRNA:   3'- -CUGGcguAGugCUGGCGGcuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44781 0.75 0.258053
Target:  5'- cGCCGcCGUCGCcguuGCCGUCGAGGAGGg -3'
miRNA:   3'- cUGGC-GUAGUGc---UGGCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 44676 0.66 0.73732
Target:  5'- cGGCCGCGagCGCGGCgGC-GAuGAGGg -3'
miRNA:   3'- -CUGGCGUa-GUGCUGgCGgCUuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 44585 0.68 0.601054
Target:  5'- cGCCGCGcUCGCGGCCGCCGc------ -3'
miRNA:   3'- cUGGCGU-AGUGCUGGCGGCuucuccg -5'
18494 3' -56.8 NC_004681.1 + 44259 0.69 0.54867
Target:  5'- cGCCGUAgcacucguauUCGCGGCCGgUGAGGgccAGGCc -3'
miRNA:   3'- cUGGCGU----------AGUGCUGGCgGCUUC---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 42234 0.73 0.352225
Target:  5'- -uCCGCA-CACGGCCGCCGAGcugcuGGUc -3'
miRNA:   3'- cuGGCGUaGUGCUGGCGGCUUcu---CCG- -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.