miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 17807 0.68 0.611636
Target:  5'- aGGCCGaCAUCaacGCGGCgGCCGcgcaAGGCa -3'
miRNA:   3'- -CUGGC-GUAG---UGCUGgCGGCuuc-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 16317 0.7 0.497795
Target:  5'- cGGCCGgAUCgACGGaaGCCGAGcAGGCc -3'
miRNA:   3'- -CUGGCgUAG-UGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62685 0.7 0.497795
Target:  5'- uGACgaUGCGUCGuCGG-CGCCGGAuGAGGCg -3'
miRNA:   3'- -CUG--GCGUAGU-GCUgGCGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16063 0.7 0.497795
Target:  5'- cGCCGCAaCGCaGACUGCCGcccucGGuGGCg -3'
miRNA:   3'- cUGGCGUaGUG-CUGGCGGCu----UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 12497 0.7 0.507812
Target:  5'- uGACCGCGgaaggcagCAacggcgaGACCGCCGAGucgcAGGCu -3'
miRNA:   3'- -CUGGCGUa-------GUg------CUGGCGGCUUc---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 44786 0.7 0.517914
Target:  5'- gGACC---UCugGACCGCCcuGGAGGUg -3'
miRNA:   3'- -CUGGcguAGugCUGGCGGcuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62753 0.69 0.538348
Target:  5'- -uCCGCAaUCAggucgacaggcUGACCGCCGAGuuGGCu -3'
miRNA:   3'- cuGGCGU-AGU-----------GCUGGCGGCUUcuCCG- -5'
18494 3' -56.8 NC_004681.1 + 34730 0.69 0.555932
Target:  5'- -cCCGCGcgCuuCGGCCGCCGccccuugucgaaguAGGGGGCa -3'
miRNA:   3'- cuGGCGUa-Gu-GCUGGCGGC--------------UUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44585 0.68 0.601054
Target:  5'- cGCCGCGcUCGCGGCCGCCGc------ -3'
miRNA:   3'- cUGGCGU-AGUGCUGGCGGCuucuccg -5'
18494 3' -56.8 NC_004681.1 + 61603 0.7 0.497795
Target:  5'- uGACUGCAcccacuccCAUGAgccCCGCCcugGAAGAGGCg -3'
miRNA:   3'- -CUGGCGUa-------GUGCU---GGCGG---CUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 14466 0.7 0.487867
Target:  5'- cGCCGCG-CGCGccgccuCCGCCGAgcAGGGcGCg -3'
miRNA:   3'- cUGGCGUaGUGCu-----GGCGGCU--UCUC-CG- -5'
18494 3' -56.8 NC_004681.1 + 50831 0.7 0.487867
Target:  5'- cACCGC--CACccaGCuCGCCGAAGAGGUg -3'
miRNA:   3'- cUGGCGuaGUGc--UG-GCGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 57791 0.81 0.108865
Target:  5'- aGACCGCGacCACGcgccgcGCCGCCGAGGuGGCg -3'
miRNA:   3'- -CUGGCGUa-GUGC------UGGCGGCUUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 33373 0.76 0.227718
Target:  5'- cGGCCGCGUCGCG-CgCGCCGu-GuGGCa -3'
miRNA:   3'- -CUGGCGUAGUGCuG-GCGGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 61670 0.74 0.284638
Target:  5'- cGCCGCcgCGgaGGCCGCCGccGAGGUc -3'
miRNA:   3'- cUGGCGuaGUg-CUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 42234 0.73 0.352225
Target:  5'- -uCCGCA-CACGGCCGCCGAGcugcuGGUc -3'
miRNA:   3'- cuGGCGUaGUGCUGGCGGCUUcu---CCG- -5'
18494 3' -56.8 NC_004681.1 + 7553 0.72 0.412173
Target:  5'- gGACUGuCGUCuacacgguggAgGACgGCCGggGAGGCc -3'
miRNA:   3'- -CUGGC-GUAG----------UgCUGgCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 1028 0.71 0.439726
Target:  5'- uGACCGCugacaaauacGUCGCGGaCGCCG-AGAGGa -3'
miRNA:   3'- -CUGGCG----------UAGUGCUgGCGGCuUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 68436 0.71 0.458666
Target:  5'- gGACgGCAcUCuacugaGGCUGCCGAAGaAGGCu -3'
miRNA:   3'- -CUGgCGU-AGug----CUGGCGGCUUC-UCCG- -5'
18494 3' -56.8 NC_004681.1 + 7892 0.71 0.458666
Target:  5'- aGACCGCcgC-CGccuccgaggaaGCCGCCGAGGAGcCg -3'
miRNA:   3'- -CUGGCGuaGuGC-----------UGGCGGCUUCUCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.