miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 34730 0.69 0.555932
Target:  5'- -cCCGCGcgCuuCGGCCGCCGccccuugucgaaguAGGGGGCa -3'
miRNA:   3'- cuGGCGUa-Gu-GCUGGCGGC--------------UUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62753 0.69 0.538348
Target:  5'- -uCCGCAaUCAggucgacaggcUGACCGCCGAGuuGGCu -3'
miRNA:   3'- cuGGCGU-AGU-----------GCUGGCGGCUUcuCCG- -5'
18494 3' -56.8 NC_004681.1 + 44786 0.7 0.517914
Target:  5'- gGACC---UCugGACCGCCcuGGAGGUg -3'
miRNA:   3'- -CUGGcguAGugCUGGCGGcuUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 12497 0.7 0.507812
Target:  5'- uGACCGCGgaaggcagCAacggcgaGACCGCCGAGucgcAGGCu -3'
miRNA:   3'- -CUGGCGUa-------GUg------CUGGCGGCUUc---UCCG- -5'
18494 3' -56.8 NC_004681.1 + 16063 0.7 0.497795
Target:  5'- cGCCGCAaCGCaGACUGCCGcccucGGuGGCg -3'
miRNA:   3'- cUGGCGUaGUG-CUGGCGGCu----UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 62685 0.7 0.497795
Target:  5'- uGACgaUGCGUCGuCGG-CGCCGGAuGAGGCg -3'
miRNA:   3'- -CUG--GCGUAGU-GCUgGCGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16317 0.7 0.497795
Target:  5'- cGGCCGgAUCgACGGaaGCCGAGcAGGCc -3'
miRNA:   3'- -CUGGCgUAG-UGCUggCGGCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22057 0.71 0.458666
Target:  5'- ---aGCAUCGCaaaggacgccGGCCGCCGAcgaAGAGGUc -3'
miRNA:   3'- cuggCGUAGUG----------CUGGCGGCU---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 17809 0.7 0.487867
Target:  5'- uGACCGCGgccguCGACUGgCGAAccgucGAGGCg -3'
miRNA:   3'- -CUGGCGUagu--GCUGGCgGCUU-----CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62197 0.7 0.497795
Target:  5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3'
miRNA:   3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22481 0.7 0.497795
Target:  5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3'
miRNA:   3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 18485 0.7 0.507812
Target:  5'- uGCCGC--CGCGGCCGCCGccu-GGCc -3'
miRNA:   3'- cUGGCGuaGUGCUGGCGGCuucuCCG- -5'
18494 3' -56.8 NC_004681.1 + 24941 0.71 0.439726
Target:  5'- cGGCCGCcgCcCGcGCCGCCGAcgccgauGAGGUc -3'
miRNA:   3'- -CUGGCGuaGuGC-UGGCGGCUu------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 37766 0.72 0.385714
Target:  5'- ---aGCGacgCGCGGCCGCUGgcGAGGCc -3'
miRNA:   3'- cuggCGUa--GUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 18142 0.72 0.377147
Target:  5'- aGACCGCG--GCG-CUGCCGu-GAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32000 0.74 0.298722
Target:  5'- -cCCGCgAUgGCGGCCGCCGc-GAGGUa -3'
miRNA:   3'- cuGGCG-UAgUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16644 0.75 0.271084
Target:  5'- aGCUGCAUacCACGGCCGCCGu-GGGGa -3'
miRNA:   3'- cUGGCGUA--GUGCUGGCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 44781 0.75 0.258053
Target:  5'- cGCCGcCGUCGCcguuGCCGUCGAGGAGGg -3'
miRNA:   3'- cUGGC-GUAGUGc---UGGCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 16583 0.66 0.75736
Target:  5'- uGCCGgGgCGCGG-CGCCGAguaguccgugGGGGGCu -3'
miRNA:   3'- cUGGCgUaGUGCUgGCGGCU----------UCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.