miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 16079 0.79 0.135118
Target:  5'- aGGCCaGCAUCugGACCGC-GggGAuGGCa -3'
miRNA:   3'- -CUGG-CGUAGugCUGGCGgCuuCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 25201 0.69 0.528094
Target:  5'- gGGgUGgGUcCGCGGCCaaccgagguGCCGAGGAGGCu -3'
miRNA:   3'- -CUgGCgUA-GUGCUGG---------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 9083 0.69 0.528094
Target:  5'- uGGCCGagGUgGCG-CCgacagcgaggagGCCGAGGAGGCg -3'
miRNA:   3'- -CUGGCg-UAgUGCuGG------------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16583 0.66 0.75736
Target:  5'- uGCCGgGgCGCGG-CGCCGAguaguccgugGGGGGCu -3'
miRNA:   3'- cUGGCgUaGUGCUgGCGGCU----------UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 18142 0.72 0.377147
Target:  5'- aGACCGCG--GCG-CUGCCGu-GAGGCg -3'
miRNA:   3'- -CUGGCGUagUGCuGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 24941 0.71 0.439726
Target:  5'- cGGCCGCcgCcCGcGCCGCCGAcgccgauGAGGUc -3'
miRNA:   3'- -CUGGCGuaGuGC-UGGCGGCUu------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22057 0.71 0.458666
Target:  5'- ---aGCAUCGCaaaggacgccGGCCGCCGAcgaAGAGGUc -3'
miRNA:   3'- cuggCGUAGUG----------CUGGCGGCU---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22481 0.7 0.497795
Target:  5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3'
miRNA:   3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 6392 0.69 0.525032
Target:  5'- cGACCGCGgcaggcccaugaucUCGCGGCCcucguUCGggGuGGCg -3'
miRNA:   3'- -CUGGCGU--------------AGUGCUGGc----GGCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 629 0.7 0.507812
Target:  5'- -cCCGuCGuugagggacUCGCGGCCGCgGAAGAuGGCc -3'
miRNA:   3'- cuGGC-GU---------AGUGCUGGCGgCUUCU-CCG- -5'
18494 3' -56.8 NC_004681.1 + 62197 0.7 0.497795
Target:  5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3'
miRNA:   3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44781 0.75 0.258053
Target:  5'- cGCCGcCGUCGCcguuGCCGUCGAGGAGGg -3'
miRNA:   3'- cUGGC-GUAGUGc---UGGCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 62104 0.7 0.517914
Target:  5'- cGGCCGCGUCGaguaGGCCGCgaucugguCGAAcAGGUg -3'
miRNA:   3'- -CUGGCGUAGUg---CUGGCG--------GCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16644 0.75 0.271084
Target:  5'- aGCUGCAUacCACGGCCGCCGu-GGGGa -3'
miRNA:   3'- cUGGCGUA--GUGCUGGCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 17809 0.7 0.487867
Target:  5'- uGACCGCGgccguCGACUGgCGAAccgucGAGGCg -3'
miRNA:   3'- -CUGGCGUagu--GCUGGCgGCUU-----CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 33391 0.7 0.517914
Target:  5'- cACCGCggCGCGACCGgCGucGAugacacccGGCa -3'
miRNA:   3'- cUGGCGuaGUGCUGGCgGCuuCU--------CCG- -5'
18494 3' -56.8 NC_004681.1 + 26545 0.69 0.528094
Target:  5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3'
miRNA:   3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32000 0.74 0.298722
Target:  5'- -cCCGCgAUgGCGGCCGCCGc-GAGGUa -3'
miRNA:   3'- cuGGCG-UAgUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 37766 0.72 0.385714
Target:  5'- ---aGCGacgCGCGGCCGCUGgcGAGGCc -3'
miRNA:   3'- cuggCGUa--GUGCUGGCGGCuuCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.