miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 3' -56.8 NC_004681.1 + 40562 0.69 0.54867
Target:  5'- cGGCCGCggcguucaauGUCAuCGGCCGCCucAAG-GGCg -3'
miRNA:   3'- -CUGGCG----------UAGU-GCUGGCGGc-UUCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 9083 0.69 0.528094
Target:  5'- uGGCCGagGUgGCG-CCgacagcgaggagGCCGAGGAGGCg -3'
miRNA:   3'- -CUGGCg-UAgUGCuGG------------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 62197 0.7 0.497795
Target:  5'- cGACUGCAgCAgGauGCCGCCcauGGAGGCc -3'
miRNA:   3'- -CUGGCGUaGUgC--UGGCGGcu-UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32000 0.74 0.298722
Target:  5'- -cCCGCgAUgGCGGCCGCCGc-GAGGUa -3'
miRNA:   3'- cuGGCG-UAgUGCUGGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 39038 0.67 0.696142
Target:  5'- aGCCGCAgaugCACGGUgGCCGGuugcAGGCu -3'
miRNA:   3'- cUGGCGUa---GUGCUGgCGGCUuc--UCCG- -5'
18494 3' -56.8 NC_004681.1 + 61858 0.68 0.590498
Target:  5'- uGGCCG-AUgGCGGCCGCgGucuGGuGGCg -3'
miRNA:   3'- -CUGGCgUAgUGCUGGCGgCu--UCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 25201 0.69 0.528094
Target:  5'- gGGgUGgGUcCGCGGCCaaccgagguGCCGAGGAGGCu -3'
miRNA:   3'- -CUgGCgUA-GUGCUGG---------CGGCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 16644 0.75 0.271084
Target:  5'- aGCUGCAUacCACGGCCGCCGu-GGGGa -3'
miRNA:   3'- cUGGCGUA--GUGCUGGCGGCuuCUCCg -5'
18494 3' -56.8 NC_004681.1 + 52698 0.68 0.590498
Target:  5'- uACCGCcuggcugCAUGAgCUGCuCGAAGAGGUu -3'
miRNA:   3'- cUGGCGua-----GUGCU-GGCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 44781 0.75 0.258053
Target:  5'- cGCCGcCGUCGCcguuGCCGUCGAGGAGGg -3'
miRNA:   3'- cUGGC-GUAGUGc---UGGCGGCUUCUCCg -5'
18494 3' -56.8 NC_004681.1 + 26545 0.69 0.528094
Target:  5'- aGCCGUAcUCugG-CgGCgCGAAGGGGCu -3'
miRNA:   3'- cUGGCGU-AGugCuGgCG-GCUUCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 47482 0.69 0.559052
Target:  5'- gGACCGCGUCGCcguGGCgCGuuGgcG-GGCg -3'
miRNA:   3'- -CUGGCGUAGUG---CUG-GCggCuuCuCCG- -5'
18494 3' -56.8 NC_004681.1 + 62104 0.7 0.517914
Target:  5'- cGGCCGCGUCGaguaGGCCGCgaucugguCGAAcAGGUg -3'
miRNA:   3'- -CUGGCGUAGUg---CUGGCG--------GCUUcUCCG- -5'
18494 3' -56.8 NC_004681.1 + 22481 0.7 0.497795
Target:  5'- uGACCaGCGUCcacuCGA-CGUCGggGAGGUc -3'
miRNA:   3'- -CUGG-CGUAGu---GCUgGCGGCuuCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 24941 0.71 0.439726
Target:  5'- cGGCCGCcgCcCGcGCCGCCGAcgccgauGAGGUc -3'
miRNA:   3'- -CUGGCGuaGuGC-UGGCGGCUu------CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 41884 0.73 0.352225
Target:  5'- cACUGCggCGCGaagGCCGUCGAaccuGGAGGCg -3'
miRNA:   3'- cUGGCGuaGUGC---UGGCGGCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 67925 0.66 0.706549
Target:  5'- cGCCGCGgagaugacgCACGA-CGCUGucauAGGGGCc -3'
miRNA:   3'- cUGGCGUa--------GUGCUgGCGGCu---UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 10765 0.67 0.696142
Target:  5'- uGCaCGCG--ACGGCCGCgGGcaccGGGGGCg -3'
miRNA:   3'- cUG-GCGUagUGCUGGCGgCU----UCUCCG- -5'
18494 3' -56.8 NC_004681.1 + 32863 0.67 0.654042
Target:  5'- cGGCCcaGCGgauugC-CGACCggGCCGAAcGAGGCg -3'
miRNA:   3'- -CUGG--CGUa----GuGCUGG--CGGCUU-CUCCG- -5'
18494 3' -56.8 NC_004681.1 + 51189 0.68 0.594717
Target:  5'- aGGCCGuCGUCuugggcGCucuggacuucucucaGGCCGUCGAGGAGGUc -3'
miRNA:   3'- -CUGGC-GUAG------UG---------------CUGGCGGCUUCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.