miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 34848 0.66 0.751983
Target:  5'- cUUGCCCccuACUUCGacaaGGGGCGGCGg--CCg -3'
miRNA:   3'- -AGCGGG---UGGAGU----UCUCGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 19369 0.66 0.751983
Target:  5'- gUCGaCCaCACCggCcuGGGCgacgGGUACAUCCa -3'
miRNA:   3'- -AGC-GG-GUGGa-GuuCUCG----CCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 5458 0.66 0.751983
Target:  5'- cCGUUCGCCUUcuGGGAGUGGguCG-CCu -3'
miRNA:   3'- aGCGGGUGGAG--UUCUCGCCguGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 16393 0.66 0.741894
Target:  5'- cUCGgCCACCUcCAAGGGUgaccaGGC-CAUgCg -3'
miRNA:   3'- -AGCgGGUGGA-GUUCUCG-----CCGuGUAgG- -5'
18494 5' -56.6 NC_004681.1 + 33628 0.66 0.741894
Target:  5'- gUCGCCgACCUgGAGGcGCaGGuCACcuUCCu -3'
miRNA:   3'- -AGCGGgUGGAgUUCU-CG-CC-GUGu-AGG- -5'
18494 5' -56.6 NC_004681.1 + 29158 0.66 0.741894
Target:  5'- aCGgCCACgUCAAcgaccaaccccuGGGCGGC-CAUCa -3'
miRNA:   3'- aGCgGGUGgAGUU------------CUCGCCGuGUAGg -5'
18494 5' -56.6 NC_004681.1 + 4784 0.66 0.741894
Target:  5'- gCGUCCACUcgAAGAuGCGGUGCAUaCUg -3'
miRNA:   3'- aGCGGGUGGagUUCU-CGCCGUGUA-GG- -5'
18494 5' -56.6 NC_004681.1 + 58775 0.66 0.739863
Target:  5'- gUCcCCCGCCaUCAGGcagguguggcccGCGGCGCAggcggCCg -3'
miRNA:   3'- -AGcGGGUGG-AGUUCu-----------CGCCGUGUa----GG- -5'
18494 5' -56.6 NC_004681.1 + 12728 0.66 0.738846
Target:  5'- -aGCCCACgUCuuGGGCguguaugccaucuaGGCACcUCCu -3'
miRNA:   3'- agCGGGUGgAGuuCUCG--------------CCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 49449 0.66 0.7317
Target:  5'- gCGCCCAgUggUCAGcgcccGCGGCGCcgCCg -3'
miRNA:   3'- aGCGGGUgG--AGUUcu---CGCCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 14472 0.66 0.7317
Target:  5'- gCGCgCCGCCUCcgccGAGCagGGCGCG-CUg -3'
miRNA:   3'- aGCG-GGUGGAGuu--CUCG--CCGUGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 51839 0.66 0.7317
Target:  5'- cUUGCCCGCg-CcGGGGCGGC-CG-CCg -3'
miRNA:   3'- -AGCGGGUGgaGuUCUCGCCGuGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 11522 0.66 0.721412
Target:  5'- gUGCCCGCCgUAGGAGaCGGU--GUCUu -3'
miRNA:   3'- aGCGGGUGGaGUUCUC-GCCGugUAGG- -5'
18494 5' -56.6 NC_004681.1 + 2333 0.66 0.721412
Target:  5'- gCGCCCACUUCugcGuGCcGCGCG-CCa -3'
miRNA:   3'- aGCGGGUGGAGuu-CuCGcCGUGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 42297 0.66 0.711041
Target:  5'- -gGCCCAgCUCGGGAGCaucgucaaGCucacCAUCCc -3'
miRNA:   3'- agCGGGUgGAGUUCUCGc-------CGu---GUAGG- -5'
18494 5' -56.6 NC_004681.1 + 14885 0.66 0.711041
Target:  5'- gCGCCaGCCuUCAGGA-UGGCcaggGCGUCCg -3'
miRNA:   3'- aGCGGgUGG-AGUUCUcGCCG----UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 58451 0.66 0.709999
Target:  5'- gCGCCCACgUCAAGuggaucaacgaacAGCugGGCGCcgCg -3'
miRNA:   3'- aGCGGGUGgAGUUC-------------UCG--CCGUGuaGg -5'
18494 5' -56.6 NC_004681.1 + 39036 0.66 0.700597
Target:  5'- gCGCCCACC-CAAGcuggaccagaaGGUGGUcaaGCAccugUCCg -3'
miRNA:   3'- aGCGGGUGGaGUUC-----------UCGCCG---UGU----AGG- -5'
18494 5' -56.6 NC_004681.1 + 13674 0.67 0.69009
Target:  5'- cCGCCCgcgGCCUUgAAGcGCGcGUACGUCUc -3'
miRNA:   3'- aGCGGG---UGGAG-UUCuCGC-CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 12374 0.67 0.69009
Target:  5'- gUUGCCacaggggcgACCUCGGGAGuCGGcCACAgcaCCg -3'
miRNA:   3'- -AGCGGg--------UGGAGUUCUC-GCC-GUGUa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.