miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 54293 1.13 0.00062
Target:  5'- cUCGCCCACCUCAAGAGCGGCACAUCCg -3'
miRNA:   3'- -AGCGGGUGGAGUUCUCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 40542 0.81 0.109803
Target:  5'- aUCGgCCGCCUCAAGGGCGccgagguccaacagcGCGCAUUCa -3'
miRNA:   3'- -AGCgGGUGGAGUUCUCGC---------------CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 44891 0.8 0.114709
Target:  5'- cUUGCCCACCUCcAGGGCGGUccagAgGUCCc -3'
miRNA:   3'- -AGCGGGUGGAGuUCUCGCCG----UgUAGG- -5'
18494 5' -56.6 NC_004681.1 + 2765 0.8 0.127885
Target:  5'- aCGaCCGCCUCAAGGGUGaGCGCGUCa -3'
miRNA:   3'- aGCgGGUGGAGUUCUCGC-CGUGUAGg -5'
18494 5' -56.6 NC_004681.1 + 18249 0.79 0.138672
Target:  5'- cCGCCUccaggaGCUUCAGGAGCGGCAacUCCg -3'
miRNA:   3'- aGCGGG------UGGAGUUCUCGCCGUguAGG- -5'
18494 5' -56.6 NC_004681.1 + 40367 0.78 0.171621
Target:  5'- gUGaacaCCGCCagCAAGAGCGGCACcgCCa -3'
miRNA:   3'- aGCg---GGUGGa-GUUCUCGCCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 14573 0.77 0.195112
Target:  5'- gCGCCCugCUCGgcGGAgGCGGCGCGcgcggcguucgccUCCg -3'
miRNA:   3'- aGCGGGugGAGU--UCU-CGCCGUGU-------------AGG- -5'
18494 5' -56.6 NC_004681.1 + 50276 0.75 0.246213
Target:  5'- gCGCCCACCgCAAGAagGGCcACGUCCc -3'
miRNA:   3'- aGCGGGUGGaGUUCUcgCCG-UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 1780 0.74 0.310148
Target:  5'- aUCGCCCuCCUCaccgucguaggccagGcAGAGCGaGUACAUCCc -3'
miRNA:   3'- -AGCGGGuGGAG---------------U-UCUCGC-CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 39936 0.73 0.337782
Target:  5'- uUCGCCCGCCUCAAcGAcaagucgauccGCG-CGCGUCg -3'
miRNA:   3'- -AGCGGGUGGAGUU-CU-----------CGCcGUGUAGg -5'
18494 5' -56.6 NC_004681.1 + 29669 0.73 0.343359
Target:  5'- cCGCCCACCUCGuAGAucacugcccacuugGCGGCGaugCCc -3'
miRNA:   3'- aGCGGGUGGAGU-UCU--------------CGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 17508 0.73 0.353891
Target:  5'- -gGCgCCACCcguGGGGCGGC-CGUCCa -3'
miRNA:   3'- agCG-GGUGGaguUCUCGCCGuGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 30241 0.72 0.362147
Target:  5'- aUCGCCCGCCaCAGcGGCGGCggccgguacgGCGUCg -3'
miRNA:   3'- -AGCGGGUGGaGUUcUCGCCG----------UGUAGg -5'
18494 5' -56.6 NC_004681.1 + 60539 0.72 0.370535
Target:  5'- cCGCCCugCUCAuacucGAuGCGGCagGCGUCg -3'
miRNA:   3'- aGCGGGugGAGUu----CU-CGCCG--UGUAGg -5'
18494 5' -56.6 NC_004681.1 + 23684 0.72 0.396485
Target:  5'- gCGCCCGCCUCcgcggacauAGAGUGGCccGgAUUCg -3'
miRNA:   3'- aGCGGGUGGAGu--------UCUCGCCG--UgUAGG- -5'
18494 5' -56.6 NC_004681.1 + 23863 0.71 0.414424
Target:  5'- cUCGgUCACCUCGaugcGGAGCuGCAC-UCCg -3'
miRNA:   3'- -AGCgGGUGGAGU----UCUCGcCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 13575 0.71 0.423578
Target:  5'- aCGCgCGCUUCAAGgccgcgGGCGGCcacgccaaugACGUCCa -3'
miRNA:   3'- aGCGgGUGGAGUUC------UCGCCG----------UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 57902 0.71 0.423578
Target:  5'- uUCG-CCACCUCGgcGGcGCGGCGCGUg- -3'
miRNA:   3'- -AGCgGGUGGAGU--UCuCGCCGUGUAgg -5'
18494 5' -56.6 NC_004681.1 + 64921 0.71 0.432852
Target:  5'- gCGCCCGCCUgGAGcacgaGGUGGCgACGcgCCu -3'
miRNA:   3'- aGCGGGUGGAgUUC-----UCGCCG-UGUa-GG- -5'
18494 5' -56.6 NC_004681.1 + 59178 0.71 0.439413
Target:  5'- gUCGCCaCcuaugucacggacgGCCUCccGGGCGGCuCGUCCa -3'
miRNA:   3'- -AGCGG-G--------------UGGAGuuCUCGCCGuGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.