Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18494 | 5' | -56.6 | NC_004681.1 | + | 27890 | 0.67 | 0.668929 |
Target: 5'- gCGCCCAUCUCcAGAaGUGaGCACcuuagcgCCg -3' miRNA: 3'- aGCGGGUGGAGuUCU-CGC-CGUGua-----GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 37193 | 0.67 | 0.679531 |
Target: 5'- uUCGUCguCCUCGAcGGCGcGCACGuagaugucUCCa -3' miRNA: 3'- -AGCGGguGGAGUUcUCGC-CGUGU--------AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 1322 | 0.67 | 0.679531 |
Target: 5'- cUCGCCgacaagggcUGCCUCAAGccGUGGgACGUCUa -3' miRNA: 3'- -AGCGG---------GUGGAGUUCu-CGCCgUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 15378 | 0.67 | 0.679531 |
Target: 5'- uUCGCCgaCGCCaUCcAGAaCGGCACccuGUCCg -3' miRNA: 3'- -AGCGG--GUGG-AGuUCUcGCCGUG---UAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 13674 | 0.67 | 0.69009 |
Target: 5'- cCGCCCgcgGCCUUgAAGcGCGcGUACGUCUc -3' miRNA: 3'- aGCGGG---UGGAG-UUCuCGC-CGUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 12374 | 0.67 | 0.69009 |
Target: 5'- gUUGCCacaggggcgACCUCGGGAGuCGGcCACAgcaCCg -3' miRNA: 3'- -AGCGGg--------UGGAGUUCUC-GCC-GUGUa--GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 39036 | 0.66 | 0.700597 |
Target: 5'- gCGCCCACC-CAAGcuggaccagaaGGUGGUcaaGCAccugUCCg -3' miRNA: 3'- aGCGGGUGGaGUUC-----------UCGCCG---UGU----AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 58451 | 0.66 | 0.709999 |
Target: 5'- gCGCCCACgUCAAGuggaucaacgaacAGCugGGCGCcgCg -3' miRNA: 3'- aGCGGGUGgAGUUC-------------UCG--CCGUGuaGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 14885 | 0.66 | 0.711041 |
Target: 5'- gCGCCaGCCuUCAGGA-UGGCcaggGCGUCCg -3' miRNA: 3'- aGCGGgUGG-AGUUCUcGCCG----UGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 42297 | 0.66 | 0.711041 |
Target: 5'- -gGCCCAgCUCGGGAGCaucgucaaGCucacCAUCCc -3' miRNA: 3'- agCGGGUgGAGUUCUCGc-------CGu---GUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 11522 | 0.66 | 0.721412 |
Target: 5'- gUGCCCGCCgUAGGAGaCGGU--GUCUu -3' miRNA: 3'- aGCGGGUGGaGUUCUC-GCCGugUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 2333 | 0.66 | 0.721412 |
Target: 5'- gCGCCCACUUCugcGuGCcGCGCG-CCa -3' miRNA: 3'- aGCGGGUGGAGuu-CuCGcCGUGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 49449 | 0.66 | 0.7317 |
Target: 5'- gCGCCCAgUggUCAGcgcccGCGGCGCcgCCg -3' miRNA: 3'- aGCGGGUgG--AGUUcu---CGCCGUGuaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 51839 | 0.66 | 0.7317 |
Target: 5'- cUUGCCCGCg-CcGGGGCGGC-CG-CCg -3' miRNA: 3'- -AGCGGGUGgaGuUCUCGCCGuGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 14472 | 0.66 | 0.7317 |
Target: 5'- gCGCgCCGCCUCcgccGAGCagGGCGCG-CUg -3' miRNA: 3'- aGCG-GGUGGAGuu--CUCG--CCGUGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 12728 | 0.66 | 0.738846 |
Target: 5'- -aGCCCACgUCuuGGGCguguaugccaucuaGGCACcUCCu -3' miRNA: 3'- agCGGGUGgAGuuCUCG--------------CCGUGuAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 58775 | 0.66 | 0.739863 |
Target: 5'- gUCcCCCGCCaUCAGGcagguguggcccGCGGCGCAggcggCCg -3' miRNA: 3'- -AGcGGGUGG-AGUUCu-----------CGCCGUGUa----GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 16393 | 0.66 | 0.741894 |
Target: 5'- cUCGgCCACCUcCAAGGGUgaccaGGC-CAUgCg -3' miRNA: 3'- -AGCgGGUGGA-GUUCUCG-----CCGuGUAgG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 29158 | 0.66 | 0.741894 |
Target: 5'- aCGgCCACgUCAAcgaccaaccccuGGGCGGC-CAUCa -3' miRNA: 3'- aGCgGGUGgAGUU------------CUCGCCGuGUAGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 33628 | 0.66 | 0.741894 |
Target: 5'- gUCGCCgACCUgGAGGcGCaGGuCACcuUCCu -3' miRNA: 3'- -AGCGGgUGGAgUUCU-CG-CC-GUGu-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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