miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 1322 0.67 0.679531
Target:  5'- cUCGCCgacaagggcUGCCUCAAGccGUGGgACGUCUa -3'
miRNA:   3'- -AGCGG---------GUGGAGUUCu-CGCCgUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 15378 0.67 0.679531
Target:  5'- uUCGCCgaCGCCaUCcAGAaCGGCACccuGUCCg -3'
miRNA:   3'- -AGCGG--GUGG-AGuUCUcGCCGUG---UAGG- -5'
18494 5' -56.6 NC_004681.1 + 37193 0.67 0.679531
Target:  5'- uUCGUCguCCUCGAcGGCGcGCACGuagaugucUCCa -3'
miRNA:   3'- -AGCGGguGGAGUUcUCGC-CGUGU--------AGG- -5'
18494 5' -56.6 NC_004681.1 + 27890 0.67 0.668929
Target:  5'- gCGCCCAUCUCcAGAaGUGaGCACcuuagcgCCg -3'
miRNA:   3'- aGCGGGUGGAGuUCU-CGC-CGUGua-----GG- -5'
18494 5' -56.6 NC_004681.1 + 12848 0.67 0.667867
Target:  5'- aUCGCUgAUCUCGcuGGCGGUAUgggugugGUCCu -3'
miRNA:   3'- -AGCGGgUGGAGUucUCGCCGUG-------UAGG- -5'
18494 5' -56.6 NC_004681.1 + 3624 0.67 0.647639
Target:  5'- gUCGCCCGCgaCAAGAaGCaGGC-CGcCCu -3'
miRNA:   3'- -AGCGGGUGgaGUUCU-CG-CCGuGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 48717 0.68 0.636968
Target:  5'- gUCGCCCGCggUCAAcGAGCuGCGCugggucuccuugGUCCa -3'
miRNA:   3'- -AGCGGGUGg-AGUU-CUCGcCGUG------------UAGG- -5'
18494 5' -56.6 NC_004681.1 + 18739 0.68 0.636968
Target:  5'- uUCuCCUcggGCUUCAGGGGUGGCGuCGUCUu -3'
miRNA:   3'- -AGcGGG---UGGAGUUCUCGCCGU-GUAGG- -5'
18494 5' -56.6 NC_004681.1 + 27792 0.68 0.618824
Target:  5'- gUGCUCACUUCuggagauGGGcgcggcggcgccaacGGUGGCGCAUCCg -3'
miRNA:   3'- aGCGGGUGGAG-------UUC---------------UCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 51612 0.68 0.594335
Target:  5'- uUCGCCCAgCUCGuagAGAaGUGGCGgA-CCu -3'
miRNA:   3'- -AGCGGGUgGAGU---UCU-CGCCGUgUaGG- -5'
18494 5' -56.6 NC_004681.1 + 678 0.69 0.562645
Target:  5'- gCGCCCugaaggaacucGCCUgGGGAuGCGGC-CGUCa -3'
miRNA:   3'- aGCGGG-----------UGGAgUUCU-CGCCGuGUAGg -5'
18494 5' -56.6 NC_004681.1 + 26337 0.69 0.562645
Target:  5'- aUGcCCCACCgcguaGGGGGCGgGCAUcgCCg -3'
miRNA:   3'- aGC-GGGUGGag---UUCUCGC-CGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 50129 0.69 0.552177
Target:  5'- aUCGCCCucGCUgaCGAcGGCGGCAUcUCCg -3'
miRNA:   3'- -AGCGGG--UGGa-GUUcUCGCCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 7268 0.69 0.541768
Target:  5'- cCGUCCACCUCGGcgccGAGU-GCGCcgCCu -3'
miRNA:   3'- aGCGGGUGGAGUU----CUCGcCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 33017 0.69 0.531426
Target:  5'- cUGCCgACCUCGGGAcaUGGCAUcgCCc -3'
miRNA:   3'- aGCGGgUGGAGUUCUc-GCCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 6993 0.69 0.521156
Target:  5'- -gGCCCAggauguucggacCCUCGuggacGAGgGGCACAUCa -3'
miRNA:   3'- agCGGGU------------GGAGUu----CUCgCCGUGUAGg -5'
18494 5' -56.6 NC_004681.1 + 45374 0.7 0.510965
Target:  5'- uUCGCCgG--UCAcGGGCGGgGCGUCCg -3'
miRNA:   3'- -AGCGGgUggAGUuCUCGCCgUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 60772 0.7 0.500857
Target:  5'- -aGaCCgCACCaUCAcGAGCGGCGCGUUUa -3'
miRNA:   3'- agC-GG-GUGG-AGUuCUCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 44223 0.7 0.500857
Target:  5'- -gGCCCgcgGCCUCGGGGGUgaGGCAgGUgCCu -3'
miRNA:   3'- agCGGG---UGGAGUUCUCG--CCGUgUA-GG- -5'
18494 5' -56.6 NC_004681.1 + 39290 0.7 0.480914
Target:  5'- aCGUCCucgACgUCGAGGGCGaGCAUcUCCg -3'
miRNA:   3'- aGCGGG---UGgAGUUCUCGC-CGUGuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.