miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 512 0.71 0.442243
Target:  5'- gUCGUCCACCggcCAAGAGaCGGUGCcggugCCc -3'
miRNA:   3'- -AGCGGGUGGa--GUUCUC-GCCGUGua---GG- -5'
18494 5' -56.6 NC_004681.1 + 678 0.69 0.562645
Target:  5'- gCGCCCugaaggaacucGCCUgGGGAuGCGGC-CGUCa -3'
miRNA:   3'- aGCGGG-----------UGGAgUUCU-CGCCGuGUAGg -5'
18494 5' -56.6 NC_004681.1 + 1322 0.67 0.679531
Target:  5'- cUCGCCgacaagggcUGCCUCAAGccGUGGgACGUCUa -3'
miRNA:   3'- -AGCGG---------GUGGAGUUCu-CGCCgUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 1780 0.74 0.310148
Target:  5'- aUCGCCCuCCUCaccgucguaggccagGcAGAGCGaGUACAUCCc -3'
miRNA:   3'- -AGCGGGuGGAG---------------U-UCUCGC-CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 2333 0.66 0.721412
Target:  5'- gCGCCCACUUCugcGuGCcGCGCG-CCa -3'
miRNA:   3'- aGCGGGUGGAGuu-CuCGcCGUGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 2765 0.8 0.127885
Target:  5'- aCGaCCGCCUCAAGGGUGaGCGCGUCa -3'
miRNA:   3'- aGCgGGUGGAGUUCUCGC-CGUGUAGg -5'
18494 5' -56.6 NC_004681.1 + 3459 0.71 0.461365
Target:  5'- aCGCCCGuCCcCAccguGGAGaCGGUcuGCAUCCa -3'
miRNA:   3'- aGCGGGU-GGaGU----UCUC-GCCG--UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 3624 0.67 0.647639
Target:  5'- gUCGCCCGCgaCAAGAaGCaGGC-CGcCCu -3'
miRNA:   3'- -AGCGGGUGgaGUUCU-CG-CCGuGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 4784 0.66 0.741894
Target:  5'- gCGUCCACUcgAAGAuGCGGUGCAUaCUg -3'
miRNA:   3'- aGCGGGUGGagUUCU-CGCCGUGUA-GG- -5'
18494 5' -56.6 NC_004681.1 + 5458 0.66 0.751983
Target:  5'- cCGUUCGCCUUcuGGGAGUGGguCG-CCu -3'
miRNA:   3'- aGCGGGUGGAG--UUCUCGCCguGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 6459 0.71 0.451748
Target:  5'- cCGCCCGCCUCG-GuGCcGGgACuAUCCc -3'
miRNA:   3'- aGCGGGUGGAGUuCuCG-CCgUG-UAGG- -5'
18494 5' -56.6 NC_004681.1 + 6993 0.69 0.521156
Target:  5'- -gGCCCAggauguucggacCCUCGuggacGAGgGGCACAUCa -3'
miRNA:   3'- agCGGGU------------GGAGUu----CUCgCCGUGUAGg -5'
18494 5' -56.6 NC_004681.1 + 7268 0.69 0.541768
Target:  5'- cCGUCCACCUCGGcgccGAGU-GCGCcgCCu -3'
miRNA:   3'- aGCGGGUGGAGUU----CUCGcCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 11522 0.66 0.721412
Target:  5'- gUGCCCGCCgUAGGAGaCGGU--GUCUu -3'
miRNA:   3'- aGCGGGUGGaGUUCUC-GCCGugUAGG- -5'
18494 5' -56.6 NC_004681.1 + 12374 0.67 0.69009
Target:  5'- gUUGCCacaggggcgACCUCGGGAGuCGGcCACAgcaCCg -3'
miRNA:   3'- -AGCGGg--------UGGAGUUCUC-GCC-GUGUa--GG- -5'
18494 5' -56.6 NC_004681.1 + 12728 0.66 0.738846
Target:  5'- -aGCCCACgUCuuGGGCguguaugccaucuaGGCACcUCCu -3'
miRNA:   3'- agCGGGUGgAGuuCUCG--------------CCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 12848 0.67 0.667867
Target:  5'- aUCGCUgAUCUCGcuGGCGGUAUgggugugGUCCu -3'
miRNA:   3'- -AGCGGgUGGAGUucUCGCCGUG-------UAGG- -5'
18494 5' -56.6 NC_004681.1 + 13575 0.71 0.423578
Target:  5'- aCGCgCGCUUCAAGgccgcgGGCGGCcacgccaaugACGUCCa -3'
miRNA:   3'- aGCGgGUGGAGUUC------UCGCCG----------UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 13674 0.67 0.69009
Target:  5'- cCGCCCgcgGCCUUgAAGcGCGcGUACGUCUc -3'
miRNA:   3'- aGCGGG---UGGAG-UUCuCGC-CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 14472 0.66 0.7317
Target:  5'- gCGCgCCGCCUCcgccGAGCagGGCGCG-CUg -3'
miRNA:   3'- aGCG-GGUGGAGuu--CUCG--CCGUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.