miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 14573 0.77 0.195112
Target:  5'- gCGCCCugCUCGgcGGAgGCGGCGCGcgcggcguucgccUCCg -3'
miRNA:   3'- aGCGGGugGAGU--UCU-CGCCGUGU-------------AGG- -5'
18494 5' -56.6 NC_004681.1 + 14885 0.66 0.711041
Target:  5'- gCGCCaGCCuUCAGGA-UGGCcaggGCGUCCg -3'
miRNA:   3'- aGCGGgUGG-AGUUCUcGCCG----UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 15378 0.67 0.679531
Target:  5'- uUCGCCgaCGCCaUCcAGAaCGGCACccuGUCCg -3'
miRNA:   3'- -AGCGG--GUGG-AGuUCUcGCCGUG---UAGG- -5'
18494 5' -56.6 NC_004681.1 + 16393 0.66 0.741894
Target:  5'- cUCGgCCACCUcCAAGGGUgaccaGGC-CAUgCg -3'
miRNA:   3'- -AGCgGGUGGA-GUUCUCG-----CCGuGUAgG- -5'
18494 5' -56.6 NC_004681.1 + 17508 0.73 0.353891
Target:  5'- -gGCgCCACCcguGGGGCGGC-CGUCCa -3'
miRNA:   3'- agCG-GGUGGaguUCUCGCCGuGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 18249 0.79 0.138672
Target:  5'- cCGCCUccaggaGCUUCAGGAGCGGCAacUCCg -3'
miRNA:   3'- aGCGGG------UGGAGUUCUCGCCGUguAGG- -5'
18494 5' -56.6 NC_004681.1 + 18739 0.68 0.636968
Target:  5'- uUCuCCUcggGCUUCAGGGGUGGCGuCGUCUu -3'
miRNA:   3'- -AGcGGG---UGGAGUUCUCGCCGU-GUAGG- -5'
18494 5' -56.6 NC_004681.1 + 19369 0.66 0.751983
Target:  5'- gUCGaCCaCACCggCcuGGGCgacgGGUACAUCCa -3'
miRNA:   3'- -AGC-GG-GUGGa-GuuCUCG----CCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 23684 0.72 0.396485
Target:  5'- gCGCCCGCCUCcgcggacauAGAGUGGCccGgAUUCg -3'
miRNA:   3'- aGCGGGUGGAGu--------UCUCGCCG--UgUAGG- -5'
18494 5' -56.6 NC_004681.1 + 23863 0.71 0.414424
Target:  5'- cUCGgUCACCUCGaugcGGAGCuGCAC-UCCg -3'
miRNA:   3'- -AGCgGGUGGAGU----UCUCGcCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 26337 0.69 0.562645
Target:  5'- aUGcCCCACCgcguaGGGGGCGgGCAUcgCCg -3'
miRNA:   3'- aGC-GGGUGGag---UUCUCGC-CGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 27792 0.68 0.618824
Target:  5'- gUGCUCACUUCuggagauGGGcgcggcggcgccaacGGUGGCGCAUCCg -3'
miRNA:   3'- aGCGGGUGGAG-------UUC---------------UCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 27890 0.67 0.668929
Target:  5'- gCGCCCAUCUCcAGAaGUGaGCACcuuagcgCCg -3'
miRNA:   3'- aGCGGGUGGAGuUCU-CGC-CGUGua-----GG- -5'
18494 5' -56.6 NC_004681.1 + 29158 0.66 0.741894
Target:  5'- aCGgCCACgUCAAcgaccaaccccuGGGCGGC-CAUCa -3'
miRNA:   3'- aGCgGGUGgAGUU------------CUCGCCGuGUAGg -5'
18494 5' -56.6 NC_004681.1 + 29669 0.73 0.343359
Target:  5'- cCGCCCACCUCGuAGAucacugcccacuugGCGGCGaugCCc -3'
miRNA:   3'- aGCGGGUGGAGU-UCU--------------CGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 30241 0.72 0.362147
Target:  5'- aUCGCCCGCCaCAGcGGCGGCggccgguacgGCGUCg -3'
miRNA:   3'- -AGCGGGUGGaGUUcUCGCCG----------UGUAGg -5'
18494 5' -56.6 NC_004681.1 + 33017 0.69 0.531426
Target:  5'- cUGCCgACCUCGGGAcaUGGCAUcgCCc -3'
miRNA:   3'- aGCGGgUGGAGUUCUc-GCCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 33628 0.66 0.741894
Target:  5'- gUCGCCgACCUgGAGGcGCaGGuCACcuUCCu -3'
miRNA:   3'- -AGCGGgUGGAgUUCU-CG-CC-GUGu-AGG- -5'
18494 5' -56.6 NC_004681.1 + 34848 0.66 0.751983
Target:  5'- cUUGCCCccuACUUCGacaaGGGGCGGCGg--CCg -3'
miRNA:   3'- -AGCGGG---UGGAGU----UCUCGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 37193 0.67 0.679531
Target:  5'- uUCGUCguCCUCGAcGGCGcGCACGuagaugucUCCa -3'
miRNA:   3'- -AGCGGguGGAGUUcUCGC-CGUGU--------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.