Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18494 | 5' | -56.6 | NC_004681.1 | + | 39036 | 0.66 | 0.700597 |
Target: 5'- gCGCCCACC-CAAGcuggaccagaaGGUGGUcaaGCAccugUCCg -3' miRNA: 3'- aGCGGGUGGaGUUC-----------UCGCCG---UGU----AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 39290 | 0.7 | 0.480914 |
Target: 5'- aCGUCCucgACgUCGAGGGCGaGCAUcUCCg -3' miRNA: 3'- aGCGGG---UGgAGUUCUCGC-CGUGuAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 39936 | 0.73 | 0.337782 |
Target: 5'- uUCGCCCGCCUCAAcGAcaagucgauccGCG-CGCGUCg -3' miRNA: 3'- -AGCGGGUGGAGUU-CU-----------CGCcGUGUAGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 40367 | 0.78 | 0.171621 |
Target: 5'- gUGaacaCCGCCagCAAGAGCGGCACcgCCa -3' miRNA: 3'- aGCg---GGUGGa-GUUCUCGCCGUGuaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 40542 | 0.81 | 0.109803 |
Target: 5'- aUCGgCCGCCUCAAGGGCGccgagguccaacagcGCGCAUUCa -3' miRNA: 3'- -AGCgGGUGGAGUUCUCGC---------------CGUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 42297 | 0.66 | 0.711041 |
Target: 5'- -gGCCCAgCUCGGGAGCaucgucaaGCucacCAUCCc -3' miRNA: 3'- agCGGGUgGAGUUCUCGc-------CGu---GUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 44223 | 0.7 | 0.500857 |
Target: 5'- -gGCCCgcgGCCUCGGGGGUgaGGCAgGUgCCu -3' miRNA: 3'- agCGGG---UGGAGUUCUCG--CCGUgUA-GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 44891 | 0.8 | 0.114709 |
Target: 5'- cUUGCCCACCUCcAGGGCGGUccagAgGUCCc -3' miRNA: 3'- -AGCGGGUGGAGuUCUCGCCG----UgUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 45374 | 0.7 | 0.510965 |
Target: 5'- uUCGCCgG--UCAcGGGCGGgGCGUCCg -3' miRNA: 3'- -AGCGGgUggAGUuCUCGCCgUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 48717 | 0.68 | 0.636968 |
Target: 5'- gUCGCCCGCggUCAAcGAGCuGCGCugggucuccuugGUCCa -3' miRNA: 3'- -AGCGGGUGg-AGUU-CUCGcCGUG------------UAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 49449 | 0.66 | 0.7317 |
Target: 5'- gCGCCCAgUggUCAGcgcccGCGGCGCcgCCg -3' miRNA: 3'- aGCGGGUgG--AGUUcu---CGCCGUGuaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 50129 | 0.69 | 0.552177 |
Target: 5'- aUCGCCCucGCUgaCGAcGGCGGCAUcUCCg -3' miRNA: 3'- -AGCGGG--UGGa-GUUcUCGCCGUGuAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 50276 | 0.75 | 0.246213 |
Target: 5'- gCGCCCACCgCAAGAagGGCcACGUCCc -3' miRNA: 3'- aGCGGGUGGaGUUCUcgCCG-UGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 51612 | 0.68 | 0.594335 |
Target: 5'- uUCGCCCAgCUCGuagAGAaGUGGCGgA-CCu -3' miRNA: 3'- -AGCGGGUgGAGU---UCU-CGCCGUgUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 51839 | 0.66 | 0.7317 |
Target: 5'- cUUGCCCGCg-CcGGGGCGGC-CG-CCg -3' miRNA: 3'- -AGCGGGUGgaGuUCUCGCCGuGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 54045 | 0.71 | 0.461365 |
Target: 5'- cCGCgCGCC-CGAGAgcccuagaagcGCGGCACAaacuUCCa -3' miRNA: 3'- aGCGgGUGGaGUUCU-----------CGCCGUGU----AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 54293 | 1.13 | 0.00062 |
Target: 5'- cUCGCCCACCUCAAGAGCGGCACAUCCg -3' miRNA: 3'- -AGCGGGUGGAGUUCUCGCCGUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 57902 | 0.71 | 0.423578 |
Target: 5'- uUCG-CCACCUCGgcGGcGCGGCGCGUg- -3' miRNA: 3'- -AGCgGGUGGAGU--UCuCGCCGUGUAgg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 58451 | 0.66 | 0.709999 |
Target: 5'- gCGCCCACgUCAAGuggaucaacgaacAGCugGGCGCcgCg -3' miRNA: 3'- aGCGGGUGgAGUUC-------------UCG--CCGUGuaGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 58775 | 0.66 | 0.739863 |
Target: 5'- gUCcCCCGCCaUCAGGcagguguggcccGCGGCGCAggcggCCg -3' miRNA: 3'- -AGcGGGUGG-AGUUCu-----------CGCCGUGUa----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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