miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 64921 0.71 0.432852
Target:  5'- gCGCCCGCCUgGAGcacgaGGUGGCgACGcgCCu -3'
miRNA:   3'- aGCGGGUGGAgUUC-----UCGCCG-UGUa-GG- -5'
18494 5' -56.6 NC_004681.1 + 60772 0.7 0.500857
Target:  5'- -aGaCCgCACCaUCAcGAGCGGCGCGUUUa -3'
miRNA:   3'- agC-GG-GUGG-AGUuCUCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 60539 0.72 0.370535
Target:  5'- cCGCCCugCUCAuacucGAuGCGGCagGCGUCg -3'
miRNA:   3'- aGCGGGugGAGUu----CU-CGCCG--UGUAGg -5'
18494 5' -56.6 NC_004681.1 + 59178 0.71 0.439413
Target:  5'- gUCGCCaCcuaugucacggacgGCCUCccGGGCGGCuCGUCCa -3'
miRNA:   3'- -AGCGG-G--------------UGGAGuuCUCGCCGuGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 58775 0.66 0.739863
Target:  5'- gUCcCCCGCCaUCAGGcagguguggcccGCGGCGCAggcggCCg -3'
miRNA:   3'- -AGcGGGUGG-AGUUCu-----------CGCCGUGUa----GG- -5'
18494 5' -56.6 NC_004681.1 + 58451 0.66 0.709999
Target:  5'- gCGCCCACgUCAAGuggaucaacgaacAGCugGGCGCcgCg -3'
miRNA:   3'- aGCGGGUGgAGUUC-------------UCG--CCGUGuaGg -5'
18494 5' -56.6 NC_004681.1 + 57902 0.71 0.423578
Target:  5'- uUCG-CCACCUCGgcGGcGCGGCGCGUg- -3'
miRNA:   3'- -AGCgGGUGGAGU--UCuCGCCGUGUAgg -5'
18494 5' -56.6 NC_004681.1 + 54293 1.13 0.00062
Target:  5'- cUCGCCCACCUCAAGAGCGGCACAUCCg -3'
miRNA:   3'- -AGCGGGUGGAGUUCUCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 54045 0.71 0.461365
Target:  5'- cCGCgCGCC-CGAGAgcccuagaagcGCGGCACAaacuUCCa -3'
miRNA:   3'- aGCGgGUGGaGUUCU-----------CGCCGUGU----AGG- -5'
18494 5' -56.6 NC_004681.1 + 51839 0.66 0.7317
Target:  5'- cUUGCCCGCg-CcGGGGCGGC-CG-CCg -3'
miRNA:   3'- -AGCGGGUGgaGuUCUCGCCGuGUaGG- -5'
18494 5' -56.6 NC_004681.1 + 51612 0.68 0.594335
Target:  5'- uUCGCCCAgCUCGuagAGAaGUGGCGgA-CCu -3'
miRNA:   3'- -AGCGGGUgGAGU---UCU-CGCCGUgUaGG- -5'
18494 5' -56.6 NC_004681.1 + 50276 0.75 0.246213
Target:  5'- gCGCCCACCgCAAGAagGGCcACGUCCc -3'
miRNA:   3'- aGCGGGUGGaGUUCUcgCCG-UGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 50129 0.69 0.552177
Target:  5'- aUCGCCCucGCUgaCGAcGGCGGCAUcUCCg -3'
miRNA:   3'- -AGCGGG--UGGa-GUUcUCGCCGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 49449 0.66 0.7317
Target:  5'- gCGCCCAgUggUCAGcgcccGCGGCGCcgCCg -3'
miRNA:   3'- aGCGGGUgG--AGUUcu---CGCCGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 48717 0.68 0.636968
Target:  5'- gUCGCCCGCggUCAAcGAGCuGCGCugggucuccuugGUCCa -3'
miRNA:   3'- -AGCGGGUGg-AGUU-CUCGcCGUG------------UAGG- -5'
18494 5' -56.6 NC_004681.1 + 45374 0.7 0.510965
Target:  5'- uUCGCCgG--UCAcGGGCGGgGCGUCCg -3'
miRNA:   3'- -AGCGGgUggAGUuCUCGCCgUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 44891 0.8 0.114709
Target:  5'- cUUGCCCACCUCcAGGGCGGUccagAgGUCCc -3'
miRNA:   3'- -AGCGGGUGGAGuUCUCGCCG----UgUAGG- -5'
18494 5' -56.6 NC_004681.1 + 44223 0.7 0.500857
Target:  5'- -gGCCCgcgGCCUCGGGGGUgaGGCAgGUgCCu -3'
miRNA:   3'- agCGGG---UGGAGUUCUCG--CCGUgUA-GG- -5'
18494 5' -56.6 NC_004681.1 + 42297 0.66 0.711041
Target:  5'- -gGCCCAgCUCGGGAGCaucgucaaGCucacCAUCCc -3'
miRNA:   3'- agCGGGUgGAGUUCUCGc-------CGu---GUAGG- -5'
18494 5' -56.6 NC_004681.1 + 40542 0.81 0.109803
Target:  5'- aUCGgCCGCCUCAAGGGCGccgagguccaacagcGCGCAUUCa -3'
miRNA:   3'- -AGCgGGUGGAGUUCUCGC---------------CGUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.