miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18494 5' -56.6 NC_004681.1 + 40542 0.81 0.109803
Target:  5'- aUCGgCCGCCUCAAGGGCGccgagguccaacagcGCGCAUUCa -3'
miRNA:   3'- -AGCgGGUGGAGUUCUCGC---------------CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 27890 0.67 0.668929
Target:  5'- gCGCCCAUCUCcAGAaGUGaGCACcuuagcgCCg -3'
miRNA:   3'- aGCGGGUGGAGuUCU-CGC-CGUGua-----GG- -5'
18494 5' -56.6 NC_004681.1 + 12374 0.67 0.69009
Target:  5'- gUUGCCacaggggcgACCUCGGGAGuCGGcCACAgcaCCg -3'
miRNA:   3'- -AGCGGg--------UGGAGUUCUC-GCC-GUGUa--GG- -5'
18494 5' -56.6 NC_004681.1 + 34848 0.66 0.751983
Target:  5'- cUUGCCCccuACUUCGacaaGGGGCGGCGg--CCg -3'
miRNA:   3'- -AGCGGG---UGGAGU----UCUCGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 17508 0.73 0.353891
Target:  5'- -gGCgCCACCcguGGGGCGGC-CGUCCa -3'
miRNA:   3'- agCG-GGUGGaguUCUCGCCGuGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 60539 0.72 0.370535
Target:  5'- cCGCCCugCUCAuacucGAuGCGGCagGCGUCg -3'
miRNA:   3'- aGCGGGugGAGUu----CU-CGCCG--UGUAGg -5'
18494 5' -56.6 NC_004681.1 + 57902 0.71 0.423578
Target:  5'- uUCG-CCACCUCGgcGGcGCGGCGCGUg- -3'
miRNA:   3'- -AGCgGGUGGAGU--UCuCGCCGUGUAgg -5'
18494 5' -56.6 NC_004681.1 + 512 0.71 0.442243
Target:  5'- gUCGUCCACCggcCAAGAGaCGGUGCcggugCCc -3'
miRNA:   3'- -AGCGGGUGGa--GUUCUC-GCCGUGua---GG- -5'
18494 5' -56.6 NC_004681.1 + 44223 0.7 0.500857
Target:  5'- -gGCCCgcgGCCUCGGGGGUgaGGCAgGUgCCu -3'
miRNA:   3'- agCGGG---UGGAGUUCUCG--CCGUgUA-GG- -5'
18494 5' -56.6 NC_004681.1 + 12848 0.67 0.667867
Target:  5'- aUCGCUgAUCUCGcuGGCGGUAUgggugugGUCCu -3'
miRNA:   3'- -AGCGGgUGGAGUucUCGCCGUG-------UAGG- -5'
18494 5' -56.6 NC_004681.1 + 678 0.69 0.562645
Target:  5'- gCGCCCugaaggaacucGCCUgGGGAuGCGGC-CGUCa -3'
miRNA:   3'- aGCGGG-----------UGGAgUUCU-CGCCGuGUAGg -5'
18494 5' -56.6 NC_004681.1 + 60772 0.7 0.500857
Target:  5'- -aGaCCgCACCaUCAcGAGCGGCGCGUUUa -3'
miRNA:   3'- agC-GG-GUGG-AGUuCUCGCCGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 44891 0.8 0.114709
Target:  5'- cUUGCCCACCUCcAGGGCGGUccagAgGUCCc -3'
miRNA:   3'- -AGCGGGUGGAGuUCUCGCCG----UgUAGG- -5'
18494 5' -56.6 NC_004681.1 + 26337 0.69 0.562645
Target:  5'- aUGcCCCACCgcguaGGGGGCGgGCAUcgCCg -3'
miRNA:   3'- aGC-GGGUGGag---UUCUCGC-CGUGuaGG- -5'
18494 5' -56.6 NC_004681.1 + 14573 0.77 0.195112
Target:  5'- gCGCCCugCUCGgcGGAgGCGGCGCGcgcggcguucgccUCCg -3'
miRNA:   3'- aGCGGGugGAGU--UCU-CGCCGUGU-------------AGG- -5'
18494 5' -56.6 NC_004681.1 + 39290 0.7 0.480914
Target:  5'- aCGUCCucgACgUCGAGGGCGaGCAUcUCCg -3'
miRNA:   3'- aGCGGG---UGgAGUUCUCGC-CGUGuAGG- -5'
18494 5' -56.6 NC_004681.1 + 18739 0.68 0.636968
Target:  5'- uUCuCCUcggGCUUCAGGGGUGGCGuCGUCUu -3'
miRNA:   3'- -AGcGGG---UGGAGUUCUCGCCGU-GUAGG- -5'
18494 5' -56.6 NC_004681.1 + 13674 0.67 0.69009
Target:  5'- cCGCCCgcgGCCUUgAAGcGCGcGUACGUCUc -3'
miRNA:   3'- aGCGGG---UGGAG-UUCuCGC-CGUGUAGG- -5'
18494 5' -56.6 NC_004681.1 + 29669 0.73 0.343359
Target:  5'- cCGCCCACCUCGuAGAucacugcccacuugGCGGCGaugCCc -3'
miRNA:   3'- aGCGGGUGGAGU-UCU--------------CGCCGUguaGG- -5'
18494 5' -56.6 NC_004681.1 + 23863 0.71 0.414424
Target:  5'- cUCGgUCACCUCGaugcGGAGCuGCAC-UCCg -3'
miRNA:   3'- -AGCgGGUGGAGU----UCUCGcCGUGuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.