Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18494 | 5' | -56.6 | NC_004681.1 | + | 34848 | 0.66 | 0.751983 |
Target: 5'- cUUGCCCccuACUUCGacaaGGGGCGGCGg--CCg -3' miRNA: 3'- -AGCGGG---UGGAGU----UCUCGCCGUguaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 12374 | 0.67 | 0.69009 |
Target: 5'- gUUGCCacaggggcgACCUCGGGAGuCGGcCACAgcaCCg -3' miRNA: 3'- -AGCGGg--------UGGAGUUCUC-GCC-GUGUa--GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 51839 | 0.66 | 0.7317 |
Target: 5'- cUUGCCCGCg-CcGGGGCGGC-CG-CCg -3' miRNA: 3'- -AGCGGGUGgaGuUCUCGCCGuGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 57902 | 0.71 | 0.423578 |
Target: 5'- uUCG-CCACCUCGgcGGcGCGGCGCGUg- -3' miRNA: 3'- -AGCgGGUGGAGU--UCuCGCCGUGUAgg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 4784 | 0.66 | 0.741894 |
Target: 5'- gCGUCCACUcgAAGAuGCGGUGCAUaCUg -3' miRNA: 3'- aGCGGGUGGagUUCU-CGCCGUGUA-GG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 23863 | 0.71 | 0.414424 |
Target: 5'- cUCGgUCACCUCGaugcGGAGCuGCAC-UCCg -3' miRNA: 3'- -AGCgGGUGGAGU----UCUCGcCGUGuAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 60539 | 0.72 | 0.370535 |
Target: 5'- cCGCCCugCUCAuacucGAuGCGGCagGCGUCg -3' miRNA: 3'- aGCGGGugGAGUu----CU-CGCCG--UGUAGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 14885 | 0.66 | 0.711041 |
Target: 5'- gCGCCaGCCuUCAGGA-UGGCcaggGCGUCCg -3' miRNA: 3'- aGCGGgUGG-AGUUCUcGCCG----UGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 39936 | 0.73 | 0.337782 |
Target: 5'- uUCGCCCGCCUCAAcGAcaagucgauccGCG-CGCGUCg -3' miRNA: 3'- -AGCGGGUGGAGUU-CU-----------CGCcGUGUAGg -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 2333 | 0.66 | 0.721412 |
Target: 5'- gCGCCCACUUCugcGuGCcGCGCG-CCa -3' miRNA: 3'- aGCGGGUGGAGuu-CuCGcCGUGUaGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 42297 | 0.66 | 0.711041 |
Target: 5'- -gGCCCAgCUCGGGAGCaucgucaaGCucacCAUCCc -3' miRNA: 3'- agCGGGUgGAGUUCUCGc-------CGu---GUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 54045 | 0.71 | 0.461365 |
Target: 5'- cCGCgCGCC-CGAGAgcccuagaagcGCGGCACAaacuUCCa -3' miRNA: 3'- aGCGgGUGGaGUUCU-----------CGCCGUGU----AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 3459 | 0.71 | 0.461365 |
Target: 5'- aCGCCCGuCCcCAccguGGAGaCGGUcuGCAUCCa -3' miRNA: 3'- aGCGGGU-GGaGU----UCUC-GCCG--UGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 6459 | 0.71 | 0.451748 |
Target: 5'- cCGCCCGCCUCG-GuGCcGGgACuAUCCc -3' miRNA: 3'- aGCGGGUGGAGUuCuCG-CCgUG-UAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 59178 | 0.71 | 0.439413 |
Target: 5'- gUCGCCaCcuaugucacggacgGCCUCccGGGCGGCuCGUCCa -3' miRNA: 3'- -AGCGG-G--------------UGGAGuuCUCGCCGuGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 37193 | 0.67 | 0.679531 |
Target: 5'- uUCGUCguCCUCGAcGGCGcGCACGuagaugucUCCa -3' miRNA: 3'- -AGCGGguGGAGUUcUCGC-CGUGU--------AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 1322 | 0.67 | 0.679531 |
Target: 5'- cUCGCCgacaagggcUGCCUCAAGccGUGGgACGUCUa -3' miRNA: 3'- -AGCGG---------GUGGAGUUCu-CGCCgUGUAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 15378 | 0.67 | 0.679531 |
Target: 5'- uUCGCCgaCGCCaUCcAGAaCGGCACccuGUCCg -3' miRNA: 3'- -AGCGG--GUGG-AGuUCUcGCCGUG---UAGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 39036 | 0.66 | 0.700597 |
Target: 5'- gCGCCCACC-CAAGcuggaccagaaGGUGGUcaaGCAccugUCCg -3' miRNA: 3'- aGCGGGUGGaGUUC-----------UCGCCG---UGU----AGG- -5' |
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18494 | 5' | -56.6 | NC_004681.1 | + | 58451 | 0.66 | 0.709999 |
Target: 5'- gCGCCCACgUCAAGuggaucaacgaacAGCugGGCGCcgCg -3' miRNA: 3'- aGCGGGUGgAGUUC-------------UCG--CCGUGuaGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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