miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18495 3' -59.6 NC_004681.1 + 64332 0.66 0.591487
Target:  5'- gGGGAUU-UCAuGCCAGCgGCCauCCUCGCc -3'
miRNA:   3'- -CCUUGGuAGU-CGGUCGaCGG--GGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 74833 0.66 0.591487
Target:  5'- aGGAcACCcgCGGCCGGaUGCUCCagUGCu -3'
miRNA:   3'- -CCU-UGGuaGUCGGUCgACGGGGg-GCG- -5'
18495 3' -59.6 NC_004681.1 + 75323 0.66 0.591487
Target:  5'- uGGAuguCGUCAGCUugugGGCUGUCCUCaagGCg -3'
miRNA:   3'- -CCUug-GUAGUCGG----UCGACGGGGGg--CG- -5'
18495 3' -59.6 NC_004681.1 + 9514 0.66 0.591487
Target:  5'- aGAGCgCcUCGGCCuGCUgguguaccGCCCCUCGg -3'
miRNA:   3'- cCUUG-GuAGUCGGuCGA--------CGGGGGGCg -5'
18495 3' -59.6 NC_004681.1 + 42224 0.66 0.588362
Target:  5'- aGAACC-UCAauccgcacacggccGCCgAGCUGCUggUCCCGCc -3'
miRNA:   3'- cCUUGGuAGU--------------CGG-UCGACGG--GGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 15969 0.66 0.581083
Target:  5'- gGGGugucGCCAUCcccgcGGuCCAgauGCUGgCCUCCGCg -3'
miRNA:   3'- -CCU----UGGUAG-----UC-GGU---CGACgGGGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 410 0.66 0.581083
Target:  5'- cGGcACCGUCucuuGGCCGGUggacgacgagGgCCUCCGCu -3'
miRNA:   3'- -CCuUGGUAG----UCGGUCGa---------CgGGGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 889 0.66 0.581083
Target:  5'- cGAGCaggAUC-GCCAGCacuuccuucUGCCaCCCCGUc -3'
miRNA:   3'- cCUUGg--UAGuCGGUCG---------ACGG-GGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 63773 0.66 0.580045
Target:  5'- cGGGGCuCAcauggcccguagcUCAGUCAGguagagcagccUUGCCCCuuGCg -3'
miRNA:   3'- -CCUUG-GU-------------AGUCGGUC-----------GACGGGGggCG- -5'
18495 3' -59.6 NC_004681.1 + 37663 0.66 0.570718
Target:  5'- cGGGGCC-UC-GCCAGCgGCCgCgCGUc -3'
miRNA:   3'- -CCUUGGuAGuCGGUCGaCGGgGgGCG- -5'
18495 3' -59.6 NC_004681.1 + 60126 0.66 0.547061
Target:  5'- gGGAGCCGccgaaGGCgAGCaggUGCCCaccgggcuugaggaCCCGCa -3'
miRNA:   3'- -CCUUGGUag---UCGgUCG---ACGGG--------------GGGCG- -5'
18495 3' -59.6 NC_004681.1 + 69887 0.66 0.539921
Target:  5'- cGAACCAaugccUCAGCCgauaccgacugaGGCUGUCCUCUa- -3'
miRNA:   3'- cCUUGGU-----AGUCGG------------UCGACGGGGGGcg -5'
18495 3' -59.6 NC_004681.1 + 25171 0.67 0.519703
Target:  5'- aGGAGgC-UgAGCgAGgUGCCgCCCGCg -3'
miRNA:   3'- -CCUUgGuAgUCGgUCgACGGgGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 44262 0.67 0.516696
Target:  5'- gGGcGCCGUagcacucguauucgCGGCCGGUgaggGCCaggCCCGCg -3'
miRNA:   3'- -CCuUGGUA--------------GUCGGUCGa---CGGg--GGGCG- -5'
18495 3' -59.6 NC_004681.1 + 61280 0.67 0.509706
Target:  5'- aGGAauguggcgucGCCGUCGacCCAGUUGCCCUgggcgUCGCg -3'
miRNA:   3'- -CCU----------UGGUAGUc-GGUCGACGGGG-----GGCG- -5'
18495 3' -59.6 NC_004681.1 + 31509 0.67 0.509706
Target:  5'- gGGAgcugcACCAUCGGgCAGUccgucgcGCgCCCCGUa -3'
miRNA:   3'- -CCU-----UGGUAGUCgGUCGa------CGgGGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 38046 0.67 0.509706
Target:  5'- aGGGCCAUcCGGCCucggGGCUGaCUCgCUCGCu -3'
miRNA:   3'- cCUUGGUA-GUCGG----UCGAC-GGG-GGGCG- -5'
18495 3' -59.6 NC_004681.1 + 28031 0.67 0.49979
Target:  5'- --uGCCA-CAGCC-GUUGCCgugccgccgaggCCCCGCg -3'
miRNA:   3'- ccuUGGUaGUCGGuCGACGG------------GGGGCG- -5'
18495 3' -59.6 NC_004681.1 + 29880 0.67 0.48996
Target:  5'- gGGaAGCCAUgcaAGCUGGCUGCaCCUgGCa -3'
miRNA:   3'- -CC-UUGGUAg--UCGGUCGACGgGGGgCG- -5'
18495 3' -59.6 NC_004681.1 + 61658 0.67 0.48996
Target:  5'- gGGGGCCAUgAuuuGCUcaaaacugGGUUuCCCCCCGCg -3'
miRNA:   3'- -CCUUGGUAgU---CGG--------UCGAcGGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.