miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18495 5' -56 NC_004681.1 + 74886 0.66 0.771436
Target:  5'- aGACcgUGACGGC-CgCUGGCUaCAc- -3'
miRNA:   3'- cCUGuaGCUGCCGuGgGACCGA-GUau -5'
18495 5' -56 NC_004681.1 + 35400 0.66 0.771436
Target:  5'- cGGAUuccUCGACgGGCACCCacuGCUCu-- -3'
miRNA:   3'- -CCUGu--AGCUG-CCGUGGGac-CGAGuau -5'
18495 5' -56 NC_004681.1 + 39352 0.66 0.751431
Target:  5'- uGACG-CGGCGGC-CCUUGGCg---- -3'
miRNA:   3'- cCUGUaGCUGCCGuGGGACCGaguau -5'
18495 5' -56 NC_004681.1 + 11984 0.66 0.741248
Target:  5'- -----cCGugGGCACCgCUGGCUaCAa- -3'
miRNA:   3'- ccuguaGCugCCGUGG-GACCGA-GUau -5'
18495 5' -56 NC_004681.1 + 27773 0.66 0.741248
Target:  5'- cGGCAgCGGCGGCGCUaagGuGCUCAc- -3'
miRNA:   3'- cCUGUaGCUGCCGUGGga-C-CGAGUau -5'
18495 5' -56 NC_004681.1 + 2939 0.66 0.739199
Target:  5'- gGGACGgugaccguguagCGGCGGUcCCCgcgGGCUcCGUAg -3'
miRNA:   3'- -CCUGUa-----------GCUGCCGuGGGa--CCGA-GUAU- -5'
18495 5' -56 NC_004681.1 + 6889 0.66 0.738172
Target:  5'- cGACGUCGAccaCGGCAUguccguggccaccaCCgugGGCUCGUu -3'
miRNA:   3'- cCUGUAGCU---GCCGUG--------------GGa--CCGAGUAu -5'
18495 5' -56 NC_004681.1 + 13389 0.66 0.73096
Target:  5'- aGGC-UCGACagGGCGCCCUcGGaCUCGa- -3'
miRNA:   3'- cCUGuAGCUG--CCGUGGGA-CC-GAGUau -5'
18495 5' -56 NC_004681.1 + 14772 0.66 0.73096
Target:  5'- uGACGcCG-CGGaCGCCCUGGC-CAUc -3'
miRNA:   3'- cCUGUaGCuGCC-GUGGGACCGaGUAu -5'
18495 5' -56 NC_004681.1 + 50840 0.66 0.73096
Target:  5'- cGGACuugcUCGAUGGuCAUCCcgGGUUCGg- -3'
miRNA:   3'- -CCUGu---AGCUGCC-GUGGGa-CCGAGUau -5'
18495 5' -56 NC_004681.1 + 11356 0.66 0.720578
Target:  5'- aGGACGUUGAugaggcUGGCGaCCUGGCUgAc- -3'
miRNA:   3'- -CCUGUAGCU------GCCGUgGGACCGAgUau -5'
18495 5' -56 NC_004681.1 + 28115 0.67 0.710111
Target:  5'- gGGACcagCGACGGC-CCCgcgGGCa---- -3'
miRNA:   3'- -CCUGua-GCUGCCGuGGGa--CCGaguau -5'
18495 5' -56 NC_004681.1 + 25063 0.67 0.710111
Target:  5'- aGGGCGgcgCgGGCGGCACCUc-GCUCAg- -3'
miRNA:   3'- -CCUGUa--G-CUGCCGUGGGacCGAGUau -5'
18495 5' -56 NC_004681.1 + 59712 0.67 0.68897
Target:  5'- cGGAUGUCGA--GCGCCCUGGUg---- -3'
miRNA:   3'- -CCUGUAGCUgcCGUGGGACCGaguau -5'
18495 5' -56 NC_004681.1 + 66654 0.67 0.68897
Target:  5'- uGGGCAUCgGGgGGUACCCgaggGGC-CGg- -3'
miRNA:   3'- -CCUGUAG-CUgCCGUGGGa---CCGaGUau -5'
18495 5' -56 NC_004681.1 + 30729 0.67 0.68897
Target:  5'- gGGGCGagcUCGACGGCAugcucaucgagUCCgcgGGCUCc-- -3'
miRNA:   3'- -CCUGU---AGCUGCCGU-----------GGGa--CCGAGuau -5'
18495 5' -56 NC_004681.1 + 23214 0.67 0.678315
Target:  5'- aGGGCGuguUCGGCGGCAUCaaucuGCUCAa- -3'
miRNA:   3'- -CCUGU---AGCUGCCGUGGgac--CGAGUau -5'
18495 5' -56 NC_004681.1 + 22279 0.68 0.64614
Target:  5'- uGGCggCGugGGCGCCCUGcccgUCAUGg -3'
miRNA:   3'- cCUGuaGCugCCGUGGGACcg--AGUAU- -5'
18495 5' -56 NC_004681.1 + 25670 0.68 0.64614
Target:  5'- uGGACAccuccUUGACGGgG-CCUGGUUCAg- -3'
miRNA:   3'- -CCUGU-----AGCUGCCgUgGGACCGAGUau -5'
18495 5' -56 NC_004681.1 + 19428 0.68 0.635377
Target:  5'- aGGCGUCuGCGGCACCgaUGGCacCGUAa -3'
miRNA:   3'- cCUGUAGcUGCCGUGGg-ACCGa-GUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.