miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18496 5' -55.5 NC_004681.1 + 62489 0.66 0.829096
Target:  5'- uCUACGaaCUCCuGAUcAUGGcCCAGGCCa -3'
miRNA:   3'- -GAUGCa-GAGG-CUGcUACU-GGUCCGGg -5'
18496 5' -55.5 NC_004681.1 + 12778 0.66 0.829096
Target:  5'- aUACGguugagCUCCGcgGCGGUGAUgGGGgugccCCCa -3'
miRNA:   3'- gAUGCa-----GAGGC--UGCUACUGgUCC-----GGG- -5'
18496 5' -55.5 NC_004681.1 + 67693 0.66 0.829096
Target:  5'- -gACGUCggcaCCGACGAcaagGGCCGcuGGCgCu -3'
miRNA:   3'- gaUGCAGa---GGCUGCUa---CUGGU--CCGgG- -5'
18496 5' -55.5 NC_004681.1 + 46440 0.66 0.823831
Target:  5'- aCUGgGg--CCGAUGAUGcccagcuuccacaguGCCuGGCCCa -3'
miRNA:   3'- -GAUgCagaGGCUGCUAC---------------UGGuCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 51825 0.66 0.820283
Target:  5'- -gGCGgccgCCGACGAccACCAGGUUCc -3'
miRNA:   3'- gaUGCaga-GGCUGCUacUGGUCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 22492 0.66 0.811286
Target:  5'- -cGCGg--CCGG-GGUGACCAGcGUCCa -3'
miRNA:   3'- gaUGCagaGGCUgCUACUGGUC-CGGG- -5'
18496 5' -55.5 NC_004681.1 + 46664 0.66 0.802114
Target:  5'- -cGCGUCaugUCCGA---UGugCAGGCCa -3'
miRNA:   3'- gaUGCAG---AGGCUgcuACugGUCCGGg -5'
18496 5' -55.5 NC_004681.1 + 19337 0.67 0.783282
Target:  5'- cCUACGaggaCgagaCCGACGAguucGACCGGGUCg -3'
miRNA:   3'- -GAUGCa---Ga---GGCUGCUa---CUGGUCCGGg -5'
18496 5' -55.5 NC_004681.1 + 39413 0.67 0.782324
Target:  5'- -aGCGcagagCCGACGAUGcggggguGCCAGGCUUc -3'
miRNA:   3'- gaUGCaga--GGCUGCUAC-------UGGUCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 56757 0.67 0.763865
Target:  5'- cCUACGaCgugCCG-CGG-GGCgAGGCCCa -3'
miRNA:   3'- -GAUGCaGa--GGCuGCUaCUGgUCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 45007 0.67 0.763865
Target:  5'- -gGCGUCgcccgcUUCGGCaAUGACUGGGUCCc -3'
miRNA:   3'- gaUGCAG------AGGCUGcUACUGGUCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 13924 0.67 0.733822
Target:  5'- uUGCGUCuacUCCG-UGccGAUCAGGCCg -3'
miRNA:   3'- gAUGCAG---AGGCuGCuaCUGGUCCGGg -5'
18496 5' -55.5 NC_004681.1 + 62380 0.68 0.723603
Target:  5'- -cGCGUCgaacuccUCGGCGGUGAUCuuGCCCc -3'
miRNA:   3'- gaUGCAGa------GGCUGCUACUGGucCGGG- -5'
18496 5' -55.5 NC_004681.1 + 34451 0.68 0.7133
Target:  5'- -gACGgugCcgCCGACGAUGACCu-GCCg -3'
miRNA:   3'- gaUGCa--Ga-GGCUGCUACUGGucCGGg -5'
18496 5' -55.5 NC_004681.1 + 22908 0.68 0.712265
Target:  5'- -gGgGUCgccCCGGCGAUG-CCGuaguagcGGCCCa -3'
miRNA:   3'- gaUgCAGa--GGCUGCUACuGGU-------CCGGG- -5'
18496 5' -55.5 NC_004681.1 + 16396 0.68 0.702922
Target:  5'- -gGCcacCUCCaAgGGUGACCAGGCCa -3'
miRNA:   3'- gaUGca-GAGGcUgCUACUGGUCCGGg -5'
18496 5' -55.5 NC_004681.1 + 68704 0.68 0.702922
Target:  5'- aCUugGccugCUCCGcuccuACGAgGACUAuGGCCCg -3'
miRNA:   3'- -GAugCa---GAGGC-----UGCUaCUGGU-CCGGG- -5'
18496 5' -55.5 NC_004681.1 + 56541 0.68 0.69248
Target:  5'- -aGCuUCUgggUGACGAUGACCucgcGGCCCg -3'
miRNA:   3'- gaUGcAGAg--GCUGCUACUGGu---CCGGG- -5'
18496 5' -55.5 NC_004681.1 + 9092 0.68 0.681984
Target:  5'- -cGCGUCgucaCCGGCGccgcUGGCuCGGGCUCu -3'
miRNA:   3'- gaUGCAGa---GGCUGCu---ACUG-GUCCGGG- -5'
18496 5' -55.5 NC_004681.1 + 612 0.68 0.681984
Target:  5'- -cGCGg--CCGcggaaGAUGGCCGGGUCCa -3'
miRNA:   3'- gaUGCagaGGCug---CUACUGGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.