miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18497 3' -59 NC_004681.1 + 33366 0.66 0.620123
Target:  5'- cUGAgACCgGCCGCGUcGcgcGCGCCGUg -3'
miRNA:   3'- uGCUgUGGaCGGCGCGuC---UGUGGCAg -5'
18497 3' -59 NC_004681.1 + 60631 0.66 0.619071
Target:  5'- aGCGGCACCcucaagucgggucUGaugCGCGCGGGCACUa-- -3'
miRNA:   3'- -UGCUGUGG-------------ACg--GCGCGUCUGUGGcag -5'
18497 3' -59 NC_004681.1 + 60024 0.66 0.616965
Target:  5'- -gGGCACCUGCuCGCcuucggcggcucccGCAccuGGCACCGg- -3'
miRNA:   3'- ugCUGUGGACG-GCG--------------CGU---CUGUGGCag -5'
18497 3' -59 NC_004681.1 + 60431 0.66 0.609602
Target:  5'- uCGACGCCUGCCGCaucgaguaugaGCAGG-GCgGaUCg -3'
miRNA:   3'- uGCUGUGGACGGCG-----------CGUCUgUGgC-AG- -5'
18497 3' -59 NC_004681.1 + 15242 0.66 0.609602
Target:  5'- gGCGAuuucaCGCUgcggGCCGUugGCAGACACCa-- -3'
miRNA:   3'- -UGCU-----GUGGa---CGGCG--CGUCUGUGGcag -5'
18497 3' -59 NC_004681.1 + 24556 0.66 0.609602
Target:  5'- cCGGCGCCUcGuuGC-CGGACAgCCGgUCa -3'
miRNA:   3'- uGCUGUGGA-CggCGcGUCUGU-GGC-AG- -5'
18497 3' -59 NC_004681.1 + 5294 0.66 0.60855
Target:  5'- gGCGACAgCUcgGCCauggcggGCGCGGACagggucugACCGUUa -3'
miRNA:   3'- -UGCUGUgGA--CGG-------CGCGUCUG--------UGGCAG- -5'
18497 3' -59 NC_004681.1 + 12550 0.66 0.599098
Target:  5'- uCGugGCCgggGCCuCGaCGGugAUCGUCa -3'
miRNA:   3'- uGCugUGGa--CGGcGC-GUCugUGGCAG- -5'
18497 3' -59 NC_004681.1 + 66939 0.66 0.595952
Target:  5'- gGCGGC-CCuggUGCCGCGCGccgagcucgaaggcGACAUCGg- -3'
miRNA:   3'- -UGCUGuGG---ACGGCGCGU--------------CUGUGGCag -5'
18497 3' -59 NC_004681.1 + 19804 0.66 0.58862
Target:  5'- aACGGcCGCCaguaccgcgUGCUGCGCGGugACCc-- -3'
miRNA:   3'- -UGCU-GUGG---------ACGGCGCGUCugUGGcag -5'
18497 3' -59 NC_004681.1 + 18537 0.66 0.58862
Target:  5'- aACGACucACC-GCUG-GCGGAC-CCGUCc -3'
miRNA:   3'- -UGCUG--UGGaCGGCgCGUCUGuGGCAG- -5'
18497 3' -59 NC_004681.1 + 49584 0.66 0.58862
Target:  5'- aACGACugCaucaggcggGCCaagaagGCGCAGAUucCCGUCg -3'
miRNA:   3'- -UGCUGugGa--------CGG------CGCGUCUGu-GGCAG- -5'
18497 3' -59 NC_004681.1 + 70516 0.66 0.567771
Target:  5'- gAUGACAgCUGUCGCGC--GCGCgCGUg -3'
miRNA:   3'- -UGCUGUgGACGGCGCGucUGUG-GCAg -5'
18497 3' -59 NC_004681.1 + 65263 0.66 0.567771
Target:  5'- gGCGGCgucguaguagACC-GaaGCGCGGACACCGg- -3'
miRNA:   3'- -UGCUG----------UGGaCggCGCGUCUGUGGCag -5'
18497 3' -59 NC_004681.1 + 32120 0.66 0.567771
Target:  5'- --cACACCgGCCGUGCcGACACCc-- -3'
miRNA:   3'- ugcUGUGGaCGGCGCGuCUGUGGcag -5'
18497 3' -59 NC_004681.1 + 49577 0.66 0.566734
Target:  5'- gGCGACugggcaguaggGCUUGCCGUccuuguaGCGGGgGCCGUg -3'
miRNA:   3'- -UGCUG-----------UGGACGGCG-------CGUCUgUGGCAg -5'
18497 3' -59 NC_004681.1 + 65177 0.67 0.547114
Target:  5'- uACGACGCC-GCCaaGCGCcaccuGGACGCCu-- -3'
miRNA:   3'- -UGCUGUGGaCGG--CGCG-----UCUGUGGcag -5'
18497 3' -59 NC_004681.1 + 5804 0.67 0.547114
Target:  5'- aGCGACAg--GCCGCGCuccaGC-CCGUCa -3'
miRNA:   3'- -UGCUGUggaCGGCGCGuc--UGuGGCAG- -5'
18497 3' -59 NC_004681.1 + 40385 0.67 0.536875
Target:  5'- aGCGGCACC-GCCaGCGUGGcCGgUGUCu -3'
miRNA:   3'- -UGCUGUGGaCGG-CGCGUCuGUgGCAG- -5'
18497 3' -59 NC_004681.1 + 42982 0.67 0.536875
Target:  5'- aGCGAUuCUcggUGUCGCGCAGGCACgCGc- -3'
miRNA:   3'- -UGCUGuGG---ACGGCGCGUCUGUG-GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.