miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18497 5' -54 NC_004681.1 + 1972 0.66 0.863505
Target:  5'- uAGAugGACGUCggguugUCCgggCGAUUGGCUCc -3'
miRNA:   3'- -UCUugCUGUAG------GGGaa-GCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 65312 0.66 0.863505
Target:  5'- gAGGAUGAcCGUCCUCcgUCGAcucCCGGCg- -3'
miRNA:   3'- -UCUUGCU-GUAGGGGa-AGCU---GGUCGag -5'
18497 5' -54 NC_004681.1 + 59194 0.66 0.863505
Target:  5'- cGGACGGCcUCCCgggcggcUCGuCCAGCUUc -3'
miRNA:   3'- uCUUGCUGuAGGGga-----AGCuGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 9904 0.66 0.863505
Target:  5'- uGGucuCGACcUCgUCC-UCGACCAGCUUg -3'
miRNA:   3'- -UCuu-GCUGuAG-GGGaAGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 60302 0.66 0.855335
Target:  5'- -aGGCGugAUCCCCgcgCGGCgGGUg- -3'
miRNA:   3'- ucUUGCugUAGGGGaa-GCUGgUCGag -5'
18497 5' -54 NC_004681.1 + 40176 0.66 0.855335
Target:  5'- -cGAUGAgAUagaCCCgcgcaaUCGACCGGCUCc -3'
miRNA:   3'- ucUUGCUgUAg--GGGa-----AGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 39893 0.66 0.846937
Target:  5'- cGGGCGGagaCCCCcagcgcgCGGCCAGCUg -3'
miRNA:   3'- uCUUGCUguaGGGGaa-----GCUGGUCGAg -5'
18497 5' -54 NC_004681.1 + 60020 0.66 0.846937
Target:  5'- cGGugGGCAccugcUCgCCUUCGG-CGGCUCc -3'
miRNA:   3'- uCUugCUGU-----AGgGGAAGCUgGUCGAG- -5'
18497 5' -54 NC_004681.1 + 58868 0.66 0.838317
Target:  5'- cGAGCaaacCAUCCaCUccUCGACCAGCUUc -3'
miRNA:   3'- uCUUGcu--GUAGGgGA--AGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 49211 0.66 0.838317
Target:  5'- cGGAACGGCugaagugaCCCgcgUCGucuuggucACCGGCUCu -3'
miRNA:   3'- -UCUUGCUGuag-----GGGa--AGC--------UGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 66612 0.66 0.838317
Target:  5'- uGGACGuCAUUCCC----ACCGGCUCu -3'
miRNA:   3'- uCUUGCuGUAGGGGaagcUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 1347 0.66 0.829485
Target:  5'- gGGGccACGAguUCCCCaUCGGuggggaUCGGCUCg -3'
miRNA:   3'- -UCU--UGCUguAGGGGaAGCU------GGUCGAG- -5'
18497 5' -54 NC_004681.1 + 63156 0.66 0.829485
Target:  5'- -cGACGACucgCCCCUUCc-CCcGCUCg -3'
miRNA:   3'- ucUUGCUGua-GGGGAAGcuGGuCGAG- -5'
18497 5' -54 NC_004681.1 + 50290 0.67 0.811221
Target:  5'- aAGGGCcACGUCCCCg-CGGCCGacGCUg -3'
miRNA:   3'- -UCUUGcUGUAGGGGaaGCUGGU--CGAg -5'
18497 5' -54 NC_004681.1 + 71921 0.67 0.811221
Target:  5'- -cGACGAUGUCCUCaUCGGCCGGa-- -3'
miRNA:   3'- ucUUGCUGUAGGGGaAGCUGGUCgag -5'
18497 5' -54 NC_004681.1 + 24892 0.67 0.811221
Target:  5'- gAGGGCGGCGaCCCCggcaagUGGgCAGCUg -3'
miRNA:   3'- -UCUUGCUGUaGGGGaa----GCUgGUCGAg -5'
18497 5' -54 NC_004681.1 + 15114 0.67 0.811221
Target:  5'- cGAACGACuugggGUCuCCCgagUCG-CCAGCg- -3'
miRNA:   3'- uCUUGCUG-----UAG-GGGa--AGCuGGUCGag -5'
18497 5' -54 NC_004681.1 + 13780 0.67 0.801807
Target:  5'- aAGGACGGCGcCCCCaagcugUCGucCCGGCg- -3'
miRNA:   3'- -UCUUGCUGUaGGGGa-----AGCu-GGUCGag -5'
18497 5' -54 NC_004681.1 + 8317 0.67 0.782468
Target:  5'- uGGAcaACGACAUCCCCgaggUCGAgguCC-GCa- -3'
miRNA:   3'- -UCU--UGCUGUAGGGGa---AGCU---GGuCGag -5'
18497 5' -54 NC_004681.1 + 52762 0.67 0.776543
Target:  5'- gAGAAcCGuAgGUCCCCUUggcauuucgccuuacCGuGCCAGCUCa -3'
miRNA:   3'- -UCUU-GC-UgUAGGGGAA---------------GC-UGGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.