Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18497 | 5' | -54 | NC_004681.1 | + | 60644 | 0.67 | 0.772563 |
Target: 5'- gAGGcguGCGGCGUgacuaCCCUUCGGCCcGuCUCg -3' miRNA: 3'- -UCU---UGCUGUAg----GGGAAGCUGGuC-GAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 28801 | 0.68 | 0.762516 |
Target: 5'- uGAGCGG--UCCCaugCGACCAGCg- -3' miRNA: 3'- uCUUGCUguAGGGgaaGCUGGUCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1808 | 0.68 | 0.762516 |
Target: 5'- cAGAGCGAguaCAUCCCa-UCGACguGgUCa -3' miRNA: 3'- -UCUUGCU---GUAGGGgaAGCUGguCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 16303 | 0.68 | 0.762516 |
Target: 5'- cGAG-GGCAUCCCCg-CGGCCGGaUCg -3' miRNA: 3'- uCUUgCUGUAGGGGaaGCUGGUCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1416 | 0.68 | 0.751315 |
Target: 5'- ----aGGCAgCCCUUgucggcgaggucgUCGGCCAGCUCg -3' miRNA: 3'- ucuugCUGUaGGGGA-------------AGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 22655 | 0.68 | 0.742041 |
Target: 5'- cAGAucgccuACGuccGCAUCCCCggcacCGACCAGCcCa -3' miRNA: 3'- -UCU------UGC---UGUAGGGGaa---GCUGGUCGaG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 25602 | 0.68 | 0.731635 |
Target: 5'- cGGuACGGCGUCCCCgcugagCGACCAa--- -3' miRNA: 3'- -UCuUGCUGUAGGGGaa----GCUGGUcgag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 2197 | 0.68 | 0.731635 |
Target: 5'- gGGAgACGACAUUCgCCUUCGGgUAuucGCUCa -3' miRNA: 3'- -UCU-UGCUGUAGG-GGAAGCUgGU---CGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 10106 | 0.68 | 0.731635 |
Target: 5'- cGAugGCGACGUCgUCC-UCGACCAGaUCg -3' miRNA: 3'- uCU--UGCUGUAG-GGGaAGCUGGUCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 28403 | 0.68 | 0.721131 |
Target: 5'- cGAugGGCGUCCCCauggUGAgggUCAGCUg -3' miRNA: 3'- uCUugCUGUAGGGGaa--GCU---GGUCGAg -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 45573 | 0.69 | 0.699873 |
Target: 5'- cAGGugGACAUCgCCCgcaaggUGGCCGGUg- -3' miRNA: 3'- -UCUugCUGUAG-GGGaa----GCUGGUCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 7405 | 0.69 | 0.678358 |
Target: 5'- gGGGugGaACGUCgCUggCGugCAGCUCg -3' miRNA: 3'- -UCUugC-UGUAGgGGaaGCugGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 70727 | 0.69 | 0.677277 |
Target: 5'- uAGAACGGucUCCCCguugUCGugacgguGCCAGCUg -3' miRNA: 3'- -UCUUGCUguAGGGGa---AGC-------UGGUCGAg -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 54531 | 0.7 | 0.634893 |
Target: 5'- cGGAgGAUGUCUCggUCGACgCAGCUCu -3' miRNA: 3'- uCUUgCUGUAGGGgaAGCUG-GUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 25844 | 0.7 | 0.634893 |
Target: 5'- cAGGACGGgcuCAUCUCgCUggaagacaccaUCGACCAGUUCg -3' miRNA: 3'- -UCUUGCU---GUAGGG-GA-----------AGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 14937 | 0.7 | 0.613106 |
Target: 5'- cGGuAACGcCAaggCgCCCaUCGACCAGCUCa -3' miRNA: 3'- -UC-UUGCuGUa--G-GGGaAGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 50455 | 0.71 | 0.546281 |
Target: 5'- -cGACcACGUCCCacagccgguugUCGACCAGCUCu -3' miRNA: 3'- ucUUGcUGUAGGGga---------AGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 16592 | 0.73 | 0.475911 |
Target: 5'- ---cCGGCGUCCCCggUCGACCuGCa- -3' miRNA: 3'- ucuuGCUGUAGGGGa-AGCUGGuCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 52565 | 0.74 | 0.421509 |
Target: 5'- cGGACGAgugGUCCCCUccguuuugaaccucuUCGAgCAGCUCa -3' miRNA: 3'- uCUUGCUg--UAGGGGA---------------AGCUgGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 54824 | 1.1 | 0.001533 |
Target: 5'- cAGAACGACAUCCCCUUCGACCAGCUCa -3' miRNA: 3'- -UCUUGCUGUAGGGGAAGCUGGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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