miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18497 5' -54 NC_004681.1 + 1347 0.66 0.829485
Target:  5'- gGGGccACGAguUCCCCaUCGGuggggaUCGGCUCg -3'
miRNA:   3'- -UCU--UGCUguAGGGGaAGCU------GGUCGAG- -5'
18497 5' -54 NC_004681.1 + 1416 0.68 0.751315
Target:  5'- ----aGGCAgCCCUUgucggcgaggucgUCGGCCAGCUCg -3'
miRNA:   3'- ucuugCUGUaGGGGA-------------AGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 1808 0.68 0.762516
Target:  5'- cAGAGCGAguaCAUCCCa-UCGACguGgUCa -3'
miRNA:   3'- -UCUUGCU---GUAGGGgaAGCUGguCgAG- -5'
18497 5' -54 NC_004681.1 + 1972 0.66 0.863505
Target:  5'- uAGAugGACGUCggguugUCCgggCGAUUGGCUCc -3'
miRNA:   3'- -UCUugCUGUAG------GGGaa-GCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 2197 0.68 0.731635
Target:  5'- gGGAgACGACAUUCgCCUUCGGgUAuucGCUCa -3'
miRNA:   3'- -UCU-UGCUGUAGG-GGAAGCUgGU---CGAG- -5'
18497 5' -54 NC_004681.1 + 7405 0.69 0.678358
Target:  5'- gGGGugGaACGUCgCUggCGugCAGCUCg -3'
miRNA:   3'- -UCUugC-UGUAGgGGaaGCugGUCGAG- -5'
18497 5' -54 NC_004681.1 + 8317 0.67 0.782468
Target:  5'- uGGAcaACGACAUCCCCgaggUCGAgguCC-GCa- -3'
miRNA:   3'- -UCU--UGCUGUAGGGGa---AGCU---GGuCGag -5'
18497 5' -54 NC_004681.1 + 9904 0.66 0.863505
Target:  5'- uGGucuCGACcUCgUCC-UCGACCAGCUUg -3'
miRNA:   3'- -UCuu-GCUGuAG-GGGaAGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 10106 0.68 0.731635
Target:  5'- cGAugGCGACGUCgUCC-UCGACCAGaUCg -3'
miRNA:   3'- uCU--UGCUGUAG-GGGaAGCUGGUCgAG- -5'
18497 5' -54 NC_004681.1 + 13780 0.67 0.801807
Target:  5'- aAGGACGGCGcCCCCaagcugUCGucCCGGCg- -3'
miRNA:   3'- -UCUUGCUGUaGGGGa-----AGCu-GGUCGag -5'
18497 5' -54 NC_004681.1 + 14937 0.7 0.613106
Target:  5'- cGGuAACGcCAaggCgCCCaUCGACCAGCUCa -3'
miRNA:   3'- -UC-UUGCuGUa--G-GGGaAGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 15114 0.67 0.811221
Target:  5'- cGAACGACuugggGUCuCCCgagUCG-CCAGCg- -3'
miRNA:   3'- uCUUGCUG-----UAG-GGGa--AGCuGGUCGag -5'
18497 5' -54 NC_004681.1 + 16303 0.68 0.762516
Target:  5'- cGAG-GGCAUCCCCg-CGGCCGGaUCg -3'
miRNA:   3'- uCUUgCUGUAGGGGaaGCUGGUCgAG- -5'
18497 5' -54 NC_004681.1 + 16592 0.73 0.475911
Target:  5'- ---cCGGCGUCCCCggUCGACCuGCa- -3'
miRNA:   3'- ucuuGCUGUAGGGGa-AGCUGGuCGag -5'
18497 5' -54 NC_004681.1 + 22655 0.68 0.742041
Target:  5'- cAGAucgccuACGuccGCAUCCCCggcacCGACCAGCcCa -3'
miRNA:   3'- -UCU------UGC---UGUAGGGGaa---GCUGGUCGaG- -5'
18497 5' -54 NC_004681.1 + 24892 0.67 0.811221
Target:  5'- gAGGGCGGCGaCCCCggcaagUGGgCAGCUg -3'
miRNA:   3'- -UCUUGCUGUaGGGGaa----GCUgGUCGAg -5'
18497 5' -54 NC_004681.1 + 25602 0.68 0.731635
Target:  5'- cGGuACGGCGUCCCCgcugagCGACCAa--- -3'
miRNA:   3'- -UCuUGCUGUAGGGGaa----GCUGGUcgag -5'
18497 5' -54 NC_004681.1 + 25844 0.7 0.634893
Target:  5'- cAGGACGGgcuCAUCUCgCUggaagacaccaUCGACCAGUUCg -3'
miRNA:   3'- -UCUUGCU---GUAGGG-GA-----------AGCUGGUCGAG- -5'
18497 5' -54 NC_004681.1 + 28403 0.68 0.721131
Target:  5'- cGAugGGCGUCCCCauggUGAgggUCAGCUg -3'
miRNA:   3'- uCUugCUGUAGGGGaa--GCU---GGUCGAg -5'
18497 5' -54 NC_004681.1 + 28801 0.68 0.762516
Target:  5'- uGAGCGG--UCCCaugCGACCAGCg- -3'
miRNA:   3'- uCUUGCUguAGGGgaaGCUGGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.