Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18497 | 5' | -54 | NC_004681.1 | + | 28801 | 0.68 | 0.762516 |
Target: 5'- uGAGCGG--UCCCaugCGACCAGCg- -3' miRNA: 3'- uCUUGCUguAGGGgaaGCUGGUCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 28403 | 0.68 | 0.721131 |
Target: 5'- cGAugGGCGUCCCCauggUGAgggUCAGCUg -3' miRNA: 3'- uCUugCUGUAGGGGaa--GCU---GGUCGAg -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 25844 | 0.7 | 0.634893 |
Target: 5'- cAGGACGGgcuCAUCUCgCUggaagacaccaUCGACCAGUUCg -3' miRNA: 3'- -UCUUGCU---GUAGGG-GA-----------AGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 25602 | 0.68 | 0.731635 |
Target: 5'- cGGuACGGCGUCCCCgcugagCGACCAa--- -3' miRNA: 3'- -UCuUGCUGUAGGGGaa----GCUGGUcgag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 24892 | 0.67 | 0.811221 |
Target: 5'- gAGGGCGGCGaCCCCggcaagUGGgCAGCUg -3' miRNA: 3'- -UCUUGCUGUaGGGGaa----GCUgGUCGAg -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 22655 | 0.68 | 0.742041 |
Target: 5'- cAGAucgccuACGuccGCAUCCCCggcacCGACCAGCcCa -3' miRNA: 3'- -UCU------UGC---UGUAGGGGaa---GCUGGUCGaG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 16592 | 0.73 | 0.475911 |
Target: 5'- ---cCGGCGUCCCCggUCGACCuGCa- -3' miRNA: 3'- ucuuGCUGUAGGGGa-AGCUGGuCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 16303 | 0.68 | 0.762516 |
Target: 5'- cGAG-GGCAUCCCCg-CGGCCGGaUCg -3' miRNA: 3'- uCUUgCUGUAGGGGaaGCUGGUCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 15114 | 0.67 | 0.811221 |
Target: 5'- cGAACGACuugggGUCuCCCgagUCG-CCAGCg- -3' miRNA: 3'- uCUUGCUG-----UAG-GGGa--AGCuGGUCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 14937 | 0.7 | 0.613106 |
Target: 5'- cGGuAACGcCAaggCgCCCaUCGACCAGCUCa -3' miRNA: 3'- -UC-UUGCuGUa--G-GGGaAGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 13780 | 0.67 | 0.801807 |
Target: 5'- aAGGACGGCGcCCCCaagcugUCGucCCGGCg- -3' miRNA: 3'- -UCUUGCUGUaGGGGa-----AGCu-GGUCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 10106 | 0.68 | 0.731635 |
Target: 5'- cGAugGCGACGUCgUCC-UCGACCAGaUCg -3' miRNA: 3'- uCU--UGCUGUAG-GGGaAGCUGGUCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 9904 | 0.66 | 0.863505 |
Target: 5'- uGGucuCGACcUCgUCC-UCGACCAGCUUg -3' miRNA: 3'- -UCuu-GCUGuAG-GGGaAGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 8317 | 0.67 | 0.782468 |
Target: 5'- uGGAcaACGACAUCCCCgaggUCGAgguCC-GCa- -3' miRNA: 3'- -UCU--UGCUGUAGGGGa---AGCU---GGuCGag -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 7405 | 0.69 | 0.678358 |
Target: 5'- gGGGugGaACGUCgCUggCGugCAGCUCg -3' miRNA: 3'- -UCUugC-UGUAGgGGaaGCugGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 2197 | 0.68 | 0.731635 |
Target: 5'- gGGAgACGACAUUCgCCUUCGGgUAuucGCUCa -3' miRNA: 3'- -UCU-UGCUGUAGG-GGAAGCUgGU---CGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1972 | 0.66 | 0.863505 |
Target: 5'- uAGAugGACGUCggguugUCCgggCGAUUGGCUCc -3' miRNA: 3'- -UCUugCUGUAG------GGGaa-GCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1808 | 0.68 | 0.762516 |
Target: 5'- cAGAGCGAguaCAUCCCa-UCGACguGgUCa -3' miRNA: 3'- -UCUUGCU---GUAGGGgaAGCUGguCgAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1416 | 0.68 | 0.751315 |
Target: 5'- ----aGGCAgCCCUUgucggcgaggucgUCGGCCAGCUCg -3' miRNA: 3'- ucuugCUGUaGGGGA-------------AGCUGGUCGAG- -5' |
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18497 | 5' | -54 | NC_004681.1 | + | 1347 | 0.66 | 0.829485 |
Target: 5'- gGGGccACGAguUCCCCaUCGGuggggaUCGGCUCg -3' miRNA: 3'- -UCU--UGCUguAGGGGaAGCU------GGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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