Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18497 | 5' | -54 | NC_004681.1 | + | 60020 | 0.66 | 0.846937 |
Target: 5'- cGGugGGCAccugcUCgCCUUCGG-CGGCUCc -3' miRNA: 3'- uCUugCUGU-----AGgGGAAGCUgGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 13780 | 0.67 | 0.801807 |
Target: 5'- aAGGACGGCGcCCCCaagcugUCGucCCGGCg- -3' miRNA: 3'- -UCUUGCUGUaGGGGa-----AGCu-GGUCGag -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 24892 | 0.67 | 0.811221 |
Target: 5'- gAGGGCGGCGaCCCCggcaagUGGgCAGCUg -3' miRNA: 3'- -UCUUGCUGUaGGGGaa----GCUgGUCGAg -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 71921 | 0.67 | 0.811221 |
Target: 5'- -cGACGAUGUCCUCaUCGGCCGGa-- -3' miRNA: 3'- ucUUGCUGUAGGGGaAGCUGGUCgag -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 50290 | 0.67 | 0.811221 |
Target: 5'- aAGGGCcACGUCCCCg-CGGCCGacGCUg -3' miRNA: 3'- -UCUUGcUGUAGGGGaaGCUGGU--CGAg -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 63156 | 0.66 | 0.829485 |
Target: 5'- -cGACGACucgCCCCUUCc-CCcGCUCg -3' miRNA: 3'- ucUUGCUGua-GGGGAAGcuGGuCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 66612 | 0.66 | 0.838317 |
Target: 5'- uGGACGuCAUUCCC----ACCGGCUCu -3' miRNA: 3'- uCUUGCuGUAGGGGaagcUGGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 49211 | 0.66 | 0.838317 |
Target: 5'- cGGAACGGCugaagugaCCCgcgUCGucuuggucACCGGCUCu -3' miRNA: 3'- -UCUUGCUGuag-----GGGa--AGC--------UGGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 58868 | 0.66 | 0.838317 |
Target: 5'- cGAGCaaacCAUCCaCUccUCGACCAGCUUc -3' miRNA: 3'- uCUUGcu--GUAGGgGA--AGCUGGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 8317 | 0.67 | 0.782468 |
Target: 5'- uGGAcaACGACAUCCCCgaggUCGAgguCC-GCa- -3' miRNA: 3'- -UCU--UGCUGUAGGGGa---AGCU---GGuCGag -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 1808 | 0.68 | 0.762516 |
Target: 5'- cAGAGCGAguaCAUCCCa-UCGACguGgUCa -3' miRNA: 3'- -UCUUGCU---GUAGGGgaAGCUGguCgAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 16303 | 0.68 | 0.762516 |
Target: 5'- cGAG-GGCAUCCCCg-CGGCCGGaUCg -3' miRNA: 3'- uCUUgCUGUAGGGGaaGCUGGUCgAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 52565 | 0.74 | 0.421509 |
Target: 5'- cGGACGAgugGUCCCCUccguuuugaaccucuUCGAgCAGCUCa -3' miRNA: 3'- uCUUGCUg--UAGGGGA---------------AGCUgGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 16592 | 0.73 | 0.475911 |
Target: 5'- ---cCGGCGUCCCCggUCGACCuGCa- -3' miRNA: 3'- ucuuGCUGUAGGGGa-AGCUGGuCGag -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 14937 | 0.7 | 0.613106 |
Target: 5'- cGGuAACGcCAaggCgCCCaUCGACCAGCUCa -3' miRNA: 3'- -UC-UUGCuGUa--G-GGGaAGCUGGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 25844 | 0.7 | 0.634893 |
Target: 5'- cAGGACGGgcuCAUCUCgCUggaagacaccaUCGACCAGUUCg -3' miRNA: 3'- -UCUUGCU---GUAGGG-GA-----------AGCUGGUCGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 70727 | 0.69 | 0.677277 |
Target: 5'- uAGAACGGucUCCCCguugUCGugacgguGCCAGCUg -3' miRNA: 3'- -UCUUGCUguAGGGGa---AGC-------UGGUCGAg -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 45573 | 0.69 | 0.699873 |
Target: 5'- cAGGugGACAUCgCCCgcaaggUGGCCGGUg- -3' miRNA: 3'- -UCUugCUGUAG-GGGaa----GCUGGUCGag -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 2197 | 0.68 | 0.731635 |
Target: 5'- gGGAgACGACAUUCgCCUUCGGgUAuucGCUCa -3' miRNA: 3'- -UCU-UGCUGUAGG-GGAAGCUgGU---CGAG- -5' |
|||||||
18497 | 5' | -54 | NC_004681.1 | + | 22655 | 0.68 | 0.742041 |
Target: 5'- cAGAucgccuACGuccGCAUCCCCggcacCGACCAGCcCa -3' miRNA: 3'- -UCU------UGC---UGUAGGGGaa---GCUGGUCGaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home