miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18498 3' -60.8 NC_004681.1 + 49831 0.66 0.543324
Target:  5'- uGcCGCCGAGGAcaaGGGCuuucACgUCCGCc -3'
miRNA:   3'- gCuGCGGUUCCU---CCCGc---UGgAGGCGu -5'
18498 3' -60.8 NC_004681.1 + 42855 0.66 0.533283
Target:  5'- uGGCGCCAAGGucuacaccugcAGcGCGuGCCUgCGCGa -3'
miRNA:   3'- gCUGCGGUUCC-----------UCcCGC-UGGAgGCGU- -5'
18498 3' -60.8 NC_004681.1 + 18391 0.66 0.533283
Target:  5'- uGAcCGCCAgucgAGGAcuGCGGCCgugCCGCGc -3'
miRNA:   3'- gCU-GCGGU----UCCUccCGCUGGa--GGCGU- -5'
18498 3' -60.8 NC_004681.1 + 3238 0.66 0.533283
Target:  5'- aGGC-CCugGAGGAGGGCGAg--CCGCu -3'
miRNA:   3'- gCUGcGG--UUCCUCCCGCUggaGGCGu -5'
18498 3' -60.8 NC_004681.1 + 24839 0.66 0.523308
Target:  5'- uCGGCGUCGGcGGcgcGGGCGGCggCCGCc -3'
miRNA:   3'- -GCUGCGGUU-CCu--CCCGCUGgaGGCGu -5'
18498 3' -60.8 NC_004681.1 + 27704 0.66 0.523308
Target:  5'- -aGCGCCAccGAGGGUGACC-CagGCGc -3'
miRNA:   3'- gcUGCGGUucCUCCCGCUGGaGg-CGU- -5'
18498 3' -60.8 NC_004681.1 + 17509 0.66 0.503581
Target:  5'- uGGCGCCAcccGuGGGGCGGCCgUCCa-- -3'
miRNA:   3'- gCUGCGGUu--CcUCCCGCUGG-AGGcgu -5'
18498 3' -60.8 NC_004681.1 + 50317 0.66 0.503581
Target:  5'- gGGCGCCAuuGGAGcuGGCGACCaCCu-- -3'
miRNA:   3'- gCUGCGGUu-CCUC--CCGCUGGaGGcgu -5'
18498 3' -60.8 NC_004681.1 + 58121 0.66 0.493839
Target:  5'- --cCGCUAGGGAGGGgacCGGCCUacgaGCAg -3'
miRNA:   3'- gcuGCGGUUCCUCCC---GCUGGAgg--CGU- -5'
18498 3' -60.8 NC_004681.1 + 41150 0.67 0.484184
Target:  5'- gCGGCGCCGAaGAGGGCcgucgcauggguGGCUacccugCCGCGa -3'
miRNA:   3'- -GCUGCGGUUcCUCCCG------------CUGGa-----GGCGU- -5'
18498 3' -60.8 NC_004681.1 + 68893 0.67 0.484184
Target:  5'- cCGACGCCAucGAGGcGCuGACCaucgucacggCCGCc -3'
miRNA:   3'- -GCUGCGGUucCUCC-CG-CUGGa---------GGCGu -5'
18498 3' -60.8 NC_004681.1 + 67415 0.67 0.47462
Target:  5'- aCGGCcagGUCGAGGAGuuCGACCUCaCGCGa -3'
miRNA:   3'- -GCUG---CGGUUCCUCccGCUGGAG-GCGU- -5'
18498 3' -60.8 NC_004681.1 + 22386 0.67 0.47462
Target:  5'- -uGCGCCAugacGGGcAGGGCGcCCacgCCGCc -3'
miRNA:   3'- gcUGCGGU----UCC-UCCCGCuGGa--GGCGu -5'
18498 3' -60.8 NC_004681.1 + 54865 0.67 0.47462
Target:  5'- uGACGCCAAGGA---CGACCgCgGCAa -3'
miRNA:   3'- gCUGCGGUUCCUcccGCUGGaGgCGU- -5'
18498 3' -60.8 NC_004681.1 + 45693 0.67 0.465152
Target:  5'- cCGACGCgGAGGAGGcacCGGCCaCCuuGCGg -3'
miRNA:   3'- -GCUGCGgUUCCUCCc--GCUGGaGG--CGU- -5'
18498 3' -60.8 NC_004681.1 + 62698 0.67 0.452992
Target:  5'- uCGGCGCCGgaugaggcggacggGGuGGGGGCGuagaugACCUCCaaaGCAu -3'
miRNA:   3'- -GCUGCGGU--------------UC-CUCCCGC------UGGAGG---CGU- -5'
18498 3' -60.8 NC_004681.1 + 17750 0.67 0.437356
Target:  5'- aGGuCGCCAAGGgccaggagcAGGGCGAgaaCCucauggagguUCCGCAg -3'
miRNA:   3'- gCU-GCGGUUCC---------UCCCGCU---GG----------AGGCGU- -5'
18498 3' -60.8 NC_004681.1 + 19615 0.67 0.437356
Target:  5'- uGACGUUgucgGAGGAGGGCu-UgUCCGCGa -3'
miRNA:   3'- gCUGCGG----UUCCUCCCGcuGgAGGCGU- -5'
18498 3' -60.8 NC_004681.1 + 14887 0.68 0.428305
Target:  5'- gGGCGCCAgccuucAGGAuGGCcagGGCgUCCGCGg -3'
miRNA:   3'- gCUGCGGU------UCCUcCCG---CUGgAGGCGU- -5'
18498 3' -60.8 NC_004681.1 + 33090 0.68 0.428305
Target:  5'- aGugGUgGAacGAGGGCGACCUguaCGCAc -3'
miRNA:   3'- gCugCGgUUc-CUCCCGCUGGAg--GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.