miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 3' -57.1 NC_004681.1 + 54857 0.66 0.730302
Target:  5'- -cGACCGGCUgacGCCaaGGAcGACCGCgGc -3'
miRNA:   3'- cuCUGGCCGA---UGGa-CCUcUUGGUGgC- -5'
18499 3' -57.1 NC_004681.1 + 50409 0.66 0.730302
Target:  5'- -cGACUGGUa--CUGGAaccccaGGACCACCGc -3'
miRNA:   3'- cuCUGGCCGaugGACCU------CUUGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 17952 0.66 0.720038
Target:  5'- cGAGGgCGGCU-CCgu--GGGCCACCGc -3'
miRNA:   3'- -CUCUgGCCGAuGGaccuCUUGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 38876 0.66 0.709693
Target:  5'- gGAGAgCUGGCgccaCUGGAGAagGCCAgCCu -3'
miRNA:   3'- -CUCU-GGCCGaug-GACCUCU--UGGU-GGc -5'
18499 3' -57.1 NC_004681.1 + 28698 0.66 0.709693
Target:  5'- aAGGCUGGCUuagGCUUGGucgucACCACUGg -3'
miRNA:   3'- cUCUGGCCGA---UGGACCucu--UGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 7551 0.66 0.699278
Target:  5'- cGGGACUGucguCUACacggUGGAGGACgGCCGg -3'
miRNA:   3'- -CUCUGGCc---GAUGg---ACCUCUUGgUGGC- -5'
18499 3' -57.1 NC_004681.1 + 24453 0.66 0.692998
Target:  5'- -uGACCGGCUguccggcaacgaggcGCCgGGAGAGuuCCAgCGc -3'
miRNA:   3'- cuCUGGCCGA---------------UGGaCCUCUU--GGUgGC- -5'
18499 3' -57.1 NC_004681.1 + 58227 0.66 0.688801
Target:  5'- aGAGGCCGGgggaCUACCgccaUGGAGucuUCGCUGg -3'
miRNA:   3'- -CUCUGGCC----GAUGG----ACCUCuu-GGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 32326 0.66 0.68775
Target:  5'- cGAGGCCGcGCUGCCgcugcgaUGGccuGcuCCACCa -3'
miRNA:   3'- -CUCUGGC-CGAUGG-------ACCu--CuuGGUGGc -5'
18499 3' -57.1 NC_004681.1 + 17855 0.66 0.678273
Target:  5'- cGGGcgccCCGGCguucACuCUGGAGGACCuCCa -3'
miRNA:   3'- -CUCu---GGCCGa---UG-GACCUCUUGGuGGc -5'
18499 3' -57.1 NC_004681.1 + 39999 0.67 0.667704
Target:  5'- cAGGCUGGCcgcGCgCUGGGGGucuCCGCCc -3'
miRNA:   3'- cUCUGGCCGa--UG-GACCUCUu--GGUGGc -5'
18499 3' -57.1 NC_004681.1 + 48767 0.67 0.657105
Target:  5'- aGGACggCGGCUacACCUGGAGugaGGCCGUCGa -3'
miRNA:   3'- cUCUG--GCCGA--UGGACCUC---UUGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 35446 0.67 0.657105
Target:  5'- uGAGGCCGcCUGggcUUUGGAGAACUACuCGa -3'
miRNA:   3'- -CUCUGGCcGAU---GGACCUCUUGGUG-GC- -5'
18499 3' -57.1 NC_004681.1 + 7890 0.67 0.63585
Target:  5'- uGAGACCGccGCcGCCUccGAGGaaGCCGCCGa -3'
miRNA:   3'- -CUCUGGC--CGaUGGAc-CUCU--UGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 60142 0.67 0.63585
Target:  5'- --aGCCGG-UGCCaggUGcGGGAGCCGCCGa -3'
miRNA:   3'- cucUGGCCgAUGG---AC-CUCUUGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 63533 0.67 0.622023
Target:  5'- cGAGGCUGGaaGCCUGGuggccagggaauucAGGACCGCa- -3'
miRNA:   3'- -CUCUGGCCgaUGGACC--------------UCUUGGUGgc -5'
18499 3' -57.1 NC_004681.1 + 57191 0.67 0.614582
Target:  5'- aGAGugCGGCUuaACUaGGGGGcggaucGCCGCCc -3'
miRNA:   3'- -CUCugGCCGA--UGGaCCUCU------UGGUGGc -5'
18499 3' -57.1 NC_004681.1 + 24289 0.68 0.603966
Target:  5'- -uGAUCGGCUugUUGGuGcGCaCGCCGa -3'
miRNA:   3'- cuCUGGCCGAugGACCuCuUG-GUGGC- -5'
18499 3' -57.1 NC_004681.1 + 27735 0.68 0.603966
Target:  5'- uGGAUCGGCgACC---AGAGCCGCCGc -3'
miRNA:   3'- cUCUGGCCGaUGGaccUCUUGGUGGC- -5'
18499 3' -57.1 NC_004681.1 + 64588 0.68 0.561804
Target:  5'- -uGACCGGCgACCaGGAauGGACCGgCGa -3'
miRNA:   3'- cuCUGGCCGaUGGaCCU--CUUGGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.